Difference between revisions of "Biotin2.hpc.uio.no"
From medicin.ncmm.IT
(i meant </code>) |
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* storage from pythagoras, mounted as per needed for each area. | * storage from pythagoras, mounted as per needed for each area. | ||
| − | == | + | == Software Installed, List of == |
| − | + | * anacondapython | |
| + | * atac_dnase_pipelines | ||
| + | * ataqv | ||
| + | * atsas | ||
| + | * aws | ||
| + | * bamliquidator | ||
| + | * bamplot | ||
| + | * bamUtil | ||
| + | * bcftools | ||
| + | * bds | ||
| + | * bedops | ||
| + | * bedtools2 | ||
| + | * benchfftw | ||
| + | * BiasAway | ||
| + | * biopython | ||
| + | * bismark | ||
| + | * blastdbs | ||
| + | * blat | ||
| + | * bowtie | ||
| + | * bowtie1ind (bowtie 1 indexes) | ||
| + | * bowtie2 | ||
| + | * bowtie2ind (bowtie 2 indexes) | ||
| + | * BroadPeak | ||
| + | * bsExpress | ||
| + | * bsmap | ||
| + | * bsmoothalign | ||
| + | * bwa | ||
| + | * bwameth | ||
| + | * bwtool | ||
| + | * bxpython | ||
| + | * CaVEMan | ||
| + | * ccp4 | ||
| + | * CEAS | ||
| + | * cegxqc | ||
| + | * cellranger | ||
| + | * cgpBigWig | ||
| + | * cgpCAVMPP | ||
| + | * cgpVcf | ||
| + | * chimera | ||
| + | * chipseeqer2 | ||
| + | * circos | ||
| + | * cisTEM | ||
| + | * cmdstan | ||
| + | * common | ||
| + | * condaenvs | ||
| + | * cpan | ||
| + | * cta | ||
| + | * ctffind | ||
| + | * cufflinks | ||
| + | * cutadapt | ||
| + | * datamash | ||
| + | * deepTools | ||
| + | * DNAshapedTFBS | ||
| + | * eautils | ||
| + | * edd | ||
| + | * eman | ||
| + | * emboss | ||
| + | * Extral | ||
| + | * fasta | ||
| + | * FastQC | ||
| + | * fastqscreen | ||
| + | * fastx | ||
| + | * fastxtoolkit | ||
| + | * fftw | ||
| + | * fftwold | ||
| + | * FLTK | ||
| + | * frealign | ||
| + | * fseq | ||
| + | * GATK | ||
| + | * gcc494 | ||
| + | * genericscripts | ||
| + | * genomes | ||
| + | * GFFutils | ||
| + | * ghmm | ||
| + | * h5fc | ||
| + | * hdf5 | ||
| + | * hdf5_hl | ||
| + | * hdf5old15112018compiled | ||
| + | * hicpro | ||
| + | * hiddenDomains | ||
| + | * hisat2 | ||
| + | * homer | ||
| + | * htseq | ||
| + | * htslib | ||
| + | * htslib121 | ||
| + | * iced | ||
| + | * icgc | ||
| + | * IGV | ||
| + | * IGVold | ||
| + | * IGVTools | ||
| + | * iMir | ||
| + | * iMir_Linux | ||
| + | * IMP | ||
| + | * intel | ||
| + | * intervene | ||
| + | * javaclasses | ||
| + | * libmpi | ||
| + | * lux | ||
| + | * macs14 | ||
| + | * macs2 | ||
| + | * macs2old | ||
| + | * maint | ||
| + | * maq | ||
| + | * mariusR | ||
| + | * mariusRlibsite | ||
| + | * matplotlib | ||
| + | * mcl | ||
| + | * mcr | ||
| + | * mcr77 | ||
| + | * mcr90 | ||
| + | * mcrinstaller | ||
| + | * meme | ||
| + | * memeold4102 | ||
| + | * methpipe | ||
| + | * methypipe2 | ||
| + | * miniconda3 | ||
| + | * mirvas | ||
| + | * mixcr | ||
| + | * moabs | ||
| + | * modules (environmental modules) | ||
| + | * ncbiblast | ||
| + | * ngsplot | ||
| + | * novocraft | ||
| + | * numpy34 | ||
| + | * octave | ||
| + | * oncodrive | ||
| + | * oPOSSUM3 | ||
| + | * pandas | ||
| + | * PCAPcore | ||
| + | * perlbrew | ||
| + | * phenix | ||
| + | * preseq | ||
| + | * pybedtools | ||
| + | * pydnase | ||
| + | * PyTables | ||
| + | * qualimap | ||
| + | * quest | ||
| + | * R | ||
| + | * rakudo | ||
| + | * relion | ||
| + | * rhpython35 | ||
| + | * rlibssite | ||
| + | * rose2 | ||
| + | * rpy | ||
| + | * rsat | ||
| + | * RSEM | ||
| + | * samtools | ||
| + | * saxsgui | ||
| + | * scipy | ||
| + | * sermx | ||
| + | * SICER | ||
| + | * snakemake | ||
| + | * sources | ||
| + | * SRA | ||
| + | * STAR | ||
| + | * stringtie | ||
| + | * subread | ||
| + | * SuiteSparse | ||
| + | * swig3 | ||
| + | * tabix | ||
| + | * TADbit | ||
| + | * tclpkgtools | ||
| + | * TFBS | ||
| + | * tophat | ||
| + | * trim_galore | ||
| + | * ucsc | ||
| + | * unison | ||
| + | * uomgenomicsutils | ||
| + | * VCFtools | ||
| + | * velvet | ||
| + | * vienna | ||
| + | * viewbs | ||
| + | * vmatch | ||
| + | * weblogo | ||
| + | * weka | ||
| + | * XDS | ||
| + | * xgboost | ||
| + | == Top Directory ( /lsc ) == | ||
| − | == | + | Top directory for all installed software is <code>/lsc</code> |
| + | |||
| + | == How are applications are run on <biotin2 == | ||
Revision as of 18:35, 8 January 2019
biotin2 is the departamental general usage server for the 'in silico' groups.
Contents
Description
- 128 cores
- 1TB RAM
- storage from pythagoras, mounted as per needed for each area.
Software Installed, List of
- anacondapython
- atac_dnase_pipelines
- ataqv
- atsas
- aws
- bamliquidator
- bamplot
- bamUtil
- bcftools
- bds
- bedops
- bedtools2
- benchfftw
- BiasAway
- biopython
- bismark
- blastdbs
- blat
- bowtie
- bowtie1ind (bowtie 1 indexes)
- bowtie2
- bowtie2ind (bowtie 2 indexes)
- BroadPeak
- bsExpress
- bsmap
- bsmoothalign
- bwa
- bwameth
- bwtool
- bxpython
- CaVEMan
- ccp4
- CEAS
- cegxqc
- cellranger
- cgpBigWig
- cgpCAVMPP
- cgpVcf
- chimera
- chipseeqer2
- circos
- cisTEM
- cmdstan
- common
- condaenvs
- cpan
- cta
- ctffind
- cufflinks
- cutadapt
- datamash
- deepTools
- DNAshapedTFBS
- eautils
- edd
- eman
- emboss
- Extral
- fasta
- FastQC
- fastqscreen
- fastx
- fastxtoolkit
- fftw
- fftwold
- FLTK
- frealign
- fseq
- GATK
- gcc494
- genericscripts
- genomes
- GFFutils
- ghmm
- h5fc
- hdf5
- hdf5_hl
- hdf5old15112018compiled
- hicpro
- hiddenDomains
- hisat2
- homer
- htseq
- htslib
- htslib121
- iced
- icgc
- IGV
- IGVold
- IGVTools
- iMir
- iMir_Linux
- IMP
- intel
- intervene
- javaclasses
- libmpi
- lux
- macs14
- macs2
- macs2old
- maint
- maq
- mariusR
- mariusRlibsite
- matplotlib
- mcl
- mcr
- mcr77
- mcr90
- mcrinstaller
- meme
- memeold4102
- methpipe
- methypipe2
- miniconda3
- mirvas
- mixcr
- moabs
- modules (environmental modules)
- ncbiblast
- ngsplot
- novocraft
- numpy34
- octave
- oncodrive
- oPOSSUM3
- pandas
- PCAPcore
- perlbrew
- phenix
- preseq
- pybedtools
- pydnase
- PyTables
- qualimap
- quest
- R
- rakudo
- relion
- rhpython35
- rlibssite
- rose2
- rpy
- rsat
- RSEM
- samtools
- saxsgui
- scipy
- sermx
- SICER
- snakemake
- sources
- SRA
- STAR
- stringtie
- subread
- SuiteSparse
- swig3
- tabix
- TADbit
- tclpkgtools
- TFBS
- tophat
- trim_galore
- ucsc
- unison
- uomgenomicsutils
- VCFtools
- velvet
- vienna
- viewbs
- vmatch
- weblogo
- weka
- XDS
- xgboost
Top Directory ( /lsc )
Top directory for all installed software is /lsc
