Difference between revisions of "Biotin2.hpc.uio.no"
From medicin.ncmm.IT
(→Software Installed, List of) (Tag: Visual edit) |
(→Description) |
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* 128 cores | * 128 cores | ||
* 1TB RAM | * 1TB RAM | ||
| − | * storage from pythagoras, mounted as per needed for each area. | + | * storage from pythagoras, mounted as per needed for each home or group area. |
== Software Installed, List of == | == Software Installed, List of == | ||
Revision as of 18:54, 8 January 2019
biotin2 is the departamental general usage server for the 'in silico' groups.
Contents
Description
- 128 cores
- 1TB RAM
- storage from pythagoras, mounted as per needed for each home or group area.
Software Installed, List of
- anacondapython
- atac_dnase_pipelines
- ataqv
- atsas
- aws
- bamliquidator
- bamplot
- bamUtil
- bcftools
- bds
- bedops
- bedtools2
- benchfftw
- BiasAway
- biopython
- bismark
- blastdbs
- blat
- bowtie
- bowtie1ind (bowtie 1 indexes)
- bowtie2
- bowtie2ind (bowtie 2 indexes)
- BroadPeak
- bsExpress
- bsmap
- bsmoothalign
- bwa
- bwameth
- bwtool
- bxpython
- CaVEMan
- ccp4
- CEAS
- cegxqc
- cellranger
- cgpBigWig
- cgpCAVMPP
- cgpVcf
- chimera
- chipseeqer2
- circos
- cisTEM
- cmdstan
- condaenvs
- cpan
- cta
- ctffind
- cufflinks
- cutadapt
- datamash
- deepTools
- DNAshapedTFBS
- eautils
- edd
- eman
- emboss
- Extral
- fasta
- FastQC
- fastqscreen
- fastx
- fastxtoolkit
- fftw
- fftwold
- FLTK
- frealign
- fseq
- GATK
- gcc494
- genomes
- GFFutils
- ghmm
- h5fc
- hdf5
- hdf5_hl
- hicpro
- hiddenDomains
- hisat2
- homer
- htseq
- htslib
- iced
- icgc
- IGV
- IGVold
- IGVTools
- iMir
- iMir_Linux
- IMP
- intervene
- javaclasses
- libmpi
- lux
- macs14
- macs2
- macs2old
- maint
- maq
- matplotlib
- mcl
- mcr
- mcr77
- mcr90
- mcrinstaller
- meme
- methpipe
- methypipe2
- miniconda3
- mirvas
- mixcr
- moabs
- modules (environmental modules)
- ncbiblast
- ngsplot
- novocraft
- numpy34
- octave
- oncodrive
- oPOSSUM3
- pandas
- PCAPcore
- perlbrew
- phenix
- preseq
- pybedtools
- pydnase
- PyTables
- qualimap
- quest
- R
- rakudo
- relion
- rhpython35
- rlibssite
- rose2
- rpy
- rsat
- RSEM
- samtools
- saxsgui
- scipy
- sermx
- SICER
- snakemake
- sources
- SRA
- STAR
- stringtie
- subread
- SuiteSparse
- swig3
- tabix
- TADbit
- tclpkgtools
- TFBS
- tophat
- trim_galore
- ucsc
- unison
- uomgenomicsutils
- VCFtools
- velvet
- vienna
- viewbs
- vmatch
- weblogo
- weka
- XDS
- xgboost
In addition, we have a mix of GNU and Intel compilers for C, C++ and FORTRAN 77 and 90
Top Directory ( /lsc )
Top directory for all installed software is /lsc
