Difference between revisions of "This page"
From medicin.ncmm.IT
(→List of modules maintained in our production Python versions) (Tag: Visual edit) |
(→List of modules maintained in our production Python versions: Updated Python 2.7.5 version numbers) (Tag: Visual edit) |
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Line 5: | Line 5: | ||
{| class="wikitable" | {| class="wikitable" | ||
!Library/module | !Library/module | ||
− | !Python 2.7 | + | !Python 2.7.5 |
!Python 3.5.1 | !Python 3.5.1 | ||
!Python 3.6.3 | !Python 3.6.3 | ||
|- | |- | ||
|numpy | |numpy | ||
− | | | + | |1.14.2 |
|1.14.0 | |1.14.0 | ||
|1.17.0 | |1.17.0 | ||
|- | |- | ||
|scipy | |scipy | ||
− | | | + | |1.0.1 |
|1.0.0 | |1.0.0 | ||
|1.3.0 | |1.3.0 | ||
|- | |- | ||
|matplotlib | |matplotlib | ||
− | | | + | |2.2.2 |
|2.0.2 | |2.0.2 | ||
|3.1.1 | |3.1.1 | ||
|- | |- | ||
|pandas | |pandas | ||
− | | | + | |0.22.0 |
|0.20.2 | |0.20.2 | ||
|0.25.0 | |0.25.0 | ||
|- | |- | ||
|biopython | |biopython | ||
− | | | + | |1.71 |
|1.69 | |1.69 | ||
|1.74 | |1.74 | ||
|- | |- | ||
|intervene | |intervene | ||
− | | | + | |0.6.2 |
|0.6.2 | |0.6.2 | ||
|0.6.4 | |0.6.4 | ||
Line 60: | Line 60: | ||
|- | |- | ||
|pybedtools | |pybedtools | ||
− | | | + | |0.7.9 |
|0.7.9 | |0.7.9 | ||
|0.8.0 | |0.8.0 | ||
Line 70: | Line 70: | ||
|- | |- | ||
|snakemake | |snakemake | ||
− | | | + | |<nowiki>-</nowiki> |
|5.5.4 | |5.5.4 | ||
|5.5.4 | |5.5.4 | ||
|- | |- | ||
|deepTools | |deepTools | ||
− | | | + | |2.4.0_2 |
|2.5.3_2 | |2.5.3_2 | ||
|3.3.0 | |3.3.0 | ||
|- | |- | ||
|htseq | |htseq | ||
− | | | + | |0.6.1 |
|0.8.0 | |0.8.0 | ||
|0.11.2 | |0.11.2 | ||
Line 95: | Line 95: | ||
|- | |- | ||
|xgboost | |xgboost | ||
− | | | + | |0.71 |
|0.60 | |0.60 | ||
|0.90 | |0.90 | ||
|} | |} |
Revision as of 16:22, 15 August 2019
List of modules maintained in our production Python versions
The following table provides a list of all supported/maintained Python module versions, per Python version. The table concerns the biotin{2,3}.hpc.uio.no production servers.
Library/module | Python 2.7.5 | Python 3.5.1 | Python 3.6.3 |
---|---|---|---|
numpy | 1.14.2 | 1.14.0 | 1.17.0 |
scipy | 1.0.1 | 1.0.0 | 1.3.0 |
matplotlib | 2.2.2 | 2.0.2 | 3.1.1 |
pandas | 0.22.0 | 0.20.2 | 0.25.0 |
biopython | 1.71 | 1.69 | 1.74 |
intervene | 0.6.2 | 0.6.2 | 0.6.4 |
kipoi | 0.2.9 | - | |
patsy | 0.4.1 | 0.5.1 | |
python-dateutil | 1.11.0 | ||
pyparsing | 2.4.2 | ||
pybedtools | 0.7.9 | 0.7.9 | 0.8.0 |
pybigwig | 0.3.4 | 0.3.17 | |
snakemake | - | 5.5.4 | 5.5.4 |
deepTools | 2.4.0_2 | 2.5.3_2 | 3.3.0 |
htseq | 0.6.1 | 0.8.0 | 0.11.2 |
seaborn | 0.8.0 | 0.9.0 | |
statsmodels | 0.8.0 | 0.10.1 | |
xgboost | 0.71 | 0.60 | 0.90 |