Difference between revisions of "This page"
From medicin.ncmm.IT
(→List of modules maintained in our production Python versions: Updated Python 2.7.5 version numbers) (Tag: Visual edit) |
(→List of modules maintained in our production Python versions) (Tag: Visual edit) |
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| Line 9: | Line 9: | ||
!Python 3.6.3 | !Python 3.6.3 | ||
|- | |- | ||
| − | |numpy | + | |[https://cython.org/ cython] |
| + | |0.23.4 | ||
| + | |0.25.2 | ||
| + | |0.29.13 | ||
| + | |- | ||
| + | |[https://www.numpy.org/ numpy] | ||
|1.14.2 | |1.14.2 | ||
|1.14.0 | |1.14.0 | ||
|1.17.0 | |1.17.0 | ||
|- | |- | ||
| − | |scipy | + | |[https://www.scipy.org/ scipy] |
|1.0.1 | |1.0.1 | ||
|1.0.0 | |1.0.0 | ||
|1.3.0 | |1.3.0 | ||
|- | |- | ||
| − | |matplotlib | + | |[https://matplotlib.org/ matplotlib] |
|2.2.2 | |2.2.2 | ||
|2.0.2 | |2.0.2 | ||
| Line 40: | Line 45: | ||
|- | |- | ||
|kipoi | |kipoi | ||
| − | | | + | |<nowiki>-</nowiki> |
|0.2.9 | |0.2.9 | ||
| + | | - | ||
| + | |- | ||
| + | |macs2 | ||
| + | |2.1.1 | ||
| + | | - | ||
| - | | - | ||
|- | |- | ||
|patsy | |patsy | ||
| − | | | + | |0.4.0 |
|0.4.1 | |0.4.1 | ||
|0.5.1 | |0.5.1 | ||
| Line 53: | Line 63: | ||
| | | | ||
|1.11.0 | |1.11.0 | ||
| + | |- | ||
| + | |pymongo | ||
| + | |3.5.1 | ||
| + | |3.5.0 | ||
| + | |3.5.1 | ||
|- | |- | ||
|pyparsing | |pyparsing | ||
| Line 58: | Line 73: | ||
| | | | ||
|2.4.2 | |2.4.2 | ||
| + | |- | ||
| + | |pysam | ||
| + | |0.8.3 | ||
| + | |0.12.0 | ||
| + | |0.15.3 | ||
|- | |- | ||
|pybedtools | |pybedtools | ||
| Line 65: | Line 85: | ||
|- | |- | ||
|pybigwig | |pybigwig | ||
| − | | | + | |<nowiki>-</nowiki> |
|0.3.4 | |0.3.4 | ||
|0.3.17 | |0.3.17 | ||
| + | |- | ||
| + | |rpy2 | ||
| + | |2.7.3 | ||
| + | | | ||
| + | |3.0.5 | ||
|- | |- | ||
|snakemake | |snakemake | ||
| Line 90: | Line 115: | ||
|- | |- | ||
|statsmodels | |statsmodels | ||
| − | | | + | |0.6.1 |
|0.8.0 | |0.8.0 | ||
|0.10.1 | |0.10.1 | ||
Revision as of 17:10, 15 August 2019
List of modules maintained in our production Python versions
The following table provides a list of all supported/maintained Python module versions, per Python version. The table concerns the biotin{2,3}.hpc.uio.no production servers.
| Library/module | Python 2.7.5 | Python 3.5.1 | Python 3.6.3 |
|---|---|---|---|
| cython | 0.23.4 | 0.25.2 | 0.29.13 |
| numpy | 1.14.2 | 1.14.0 | 1.17.0 |
| scipy | 1.0.1 | 1.0.0 | 1.3.0 |
| matplotlib | 2.2.2 | 2.0.2 | 3.1.1 |
| pandas | 0.22.0 | 0.20.2 | 0.25.0 |
| biopython | 1.71 | 1.69 | 1.74 |
| intervene | 0.6.2 | 0.6.2 | 0.6.4 |
| kipoi | - | 0.2.9 | - |
| macs2 | 2.1.1 | - | - |
| patsy | 0.4.0 | 0.4.1 | 0.5.1 |
| python-dateutil | 1.11.0 | ||
| pymongo | 3.5.1 | 3.5.0 | 3.5.1 |
| pyparsing | 2.4.2 | ||
| pysam | 0.8.3 | 0.12.0 | 0.15.3 |
| pybedtools | 0.7.9 | 0.7.9 | 0.8.0 |
| pybigwig | - | 0.3.4 | 0.3.17 |
| rpy2 | 2.7.3 | 3.0.5 | |
| snakemake | - | 5.5.4 | 5.5.4 |
| deepTools | 2.4.0_2 | 2.5.3_2 | 3.3.0 |
| htseq | 0.6.1 | 0.8.0 | 0.11.2 |
| seaborn | 0.8.0 | 0.9.0 | |
| statsmodels | 0.6.1 | 0.8.0 | 0.10.1 |
| xgboost | 0.71 | 0.60 | 0.90 |
