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Revision as of 17:10, 15 August 2019 by Georgios@uio.no (talk | contribs) (→List of modules maintained in our production Python versions)
List of modules maintained in our production Python versions
The following table provides a list of all supported/maintained Python module versions, per Python version. The table concerns the biotin{2,3}.hpc.uio.no production servers.
Library/module | Python 2.7.5 | Python 3.5.1 | Python 3.6.3 |
---|---|---|---|
cython | 0.23.4 | 0.25.2 | 0.29.13 |
numpy | 1.14.2 | 1.14.0 | 1.17.0 |
scipy | 1.0.1 | 1.0.0 | 1.3.0 |
matplotlib | 2.2.2 | 2.0.2 | 3.1.1 |
pandas | 0.22.0 | 0.20.2 | 0.25.0 |
biopython | 1.71 | 1.69 | 1.74 |
intervene | 0.6.2 | 0.6.2 | 0.6.4 |
kipoi | - | 0.2.9 | - |
macs2 | 2.1.1 | - | - |
patsy | 0.4.0 | 0.4.1 | 0.5.1 |
python-dateutil | 1.11.0 | ||
pymongo | 3.5.1 | 3.5.0 | 3.5.1 |
pyparsing | 2.4.2 | ||
pysam | 0.8.3 | 0.12.0 | 0.15.3 |
pybedtools | 0.7.9 | 0.7.9 | 0.8.0 |
pybigwig | - | 0.3.4 | 0.3.17 |
rpy2 | 2.7.3 | 3.0.5 | |
snakemake | - | 5.5.4 | 5.5.4 |
deepTools | 2.4.0_2 | 2.5.3_2 | 3.3.0 |
htseq | 0.6.1 | 0.8.0 | 0.11.2 |
seaborn | 0.8.0 | 0.9.0 | |
statsmodels | 0.6.1 | 0.8.0 | 0.10.1 |
xgboost | 0.71 | 0.60 | 0.90 |