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(List of modules maintained in our production Python versions)
(List of modules maintained in our production Python versions)
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|3.1.1
 
|3.1.1
 
|-
 
|-
|pandas
+
|[https://pandas.pydata.org/ pandas]
 
|0.22.0
 
|0.22.0
 
|0.20.2
 
|0.20.2
 
|0.25.0
 
|0.25.0
 
|-
 
|-
|biopython
+
|[https://biopython.org/ biopython]
 
|1.71
 
|1.71
 
|1.69
 
|1.69
 
|1.74
 
|1.74
 
|-
 
|-
|intervene
+
|[https://intervene.readthedocs.io/en/latest/ intervene]
 
|0.6.2
 
|0.6.2
 
|0.6.2
 
|0.6.2

Revision as of 16:14, 15 August 2019

List of modules maintained in our production Python versions

The following table provides a list of all supported/maintained Python module versions, per Python version. The table concerns the biotin{2,3}.hpc.uio.no production servers.

Library/module Python 2.7.5 Python 3.5.1 Python 3.6.3
cython 0.23.4 0.25.2 0.29.13
numpy 1.14.2 1.14.0 1.17.0
scipy 1.0.1 1.0.0 1.3.0
matplotlib 2.2.2 2.0.2 3.1.1
pandas 0.22.0 0.20.2 0.25.0
biopython 1.71 1.69 1.74
intervene 0.6.2 0.6.2 0.6.4
kipoi - 0.2.9 -
macs2 2.1.1 - -
patsy 0.4.0 0.4.1 0.5.1
python-dateutil 1.11.0
pymongo 3.5.1 3.5.0 3.5.1
pyparsing 2.4.2
pysam 0.8.3 0.12.0 0.15.3
pybedtools 0.7.9 0.7.9 0.8.0
pybigwig - 0.3.4 0.3.17
rpy2 2.7.3 3.0.5
snakemake - 5.5.4 5.5.4
deepTools 2.4.0_2 2.5.3_2 3.3.0
htseq 0.6.1 0.8.0 0.11.2
seaborn 0.8.0 0.9.0
statsmodels 0.6.1 0.8.0 0.10.1
xgboost 0.71 0.60 0.90