Difference between revisions of "This page"

From medicin.ncmm.IT
Jump to: navigation, search
(List of modules maintained in our production Python versions: Updated Python 2.7.5 version numbers)
(List of modules maintained in our production Python versions)
Line 9: Line 9:
 
!Python 3.6.3
 
!Python 3.6.3
 
|-
 
|-
|numpy
+
|[https://cython.org/ cython]
 +
|0.23.4
 +
|0.25.2
 +
|0.29.13
 +
|-
 +
|[https://www.numpy.org/ numpy]
 
|1.14.2
 
|1.14.2
 
|1.14.0
 
|1.14.0
 
|1.17.0
 
|1.17.0
 
|-
 
|-
|scipy
+
|[https://www.scipy.org/ scipy]
 
|1.0.1
 
|1.0.1
 
|1.0.0
 
|1.0.0
 
|1.3.0
 
|1.3.0
 
|-
 
|-
|matplotlib
+
|[https://matplotlib.org/ matplotlib]
 
|2.2.2
 
|2.2.2
 
|2.0.2
 
|2.0.2
Line 40: Line 45:
 
|-
 
|-
 
|kipoi
 
|kipoi
|
+
|<nowiki>-</nowiki>
 
|0.2.9
 
|0.2.9
 +
| -
 +
|-
 +
|macs2
 +
|2.1.1
 +
| -
 
| -
 
| -
 
|-
 
|-
 
|patsy
 
|patsy
|
+
|0.4.0
 
|0.4.1
 
|0.4.1
 
|0.5.1
 
|0.5.1
Line 53: Line 63:
 
|
 
|
 
|1.11.0
 
|1.11.0
 +
|-
 +
|pymongo
 +
|3.5.1
 +
|3.5.0
 +
|3.5.1
 
|-
 
|-
 
|pyparsing
 
|pyparsing
Line 58: Line 73:
 
|
 
|
 
|2.4.2
 
|2.4.2
 +
|-
 +
|pysam
 +
|0.8.3
 +
|0.12.0
 +
|0.15.3
 
|-
 
|-
 
|pybedtools
 
|pybedtools
Line 65: Line 85:
 
|-
 
|-
 
|pybigwig
 
|pybigwig
|
+
|<nowiki>-</nowiki>
 
|0.3.4
 
|0.3.4
 
|0.3.17
 
|0.3.17
 +
|-
 +
|rpy2
 +
|2.7.3
 +
|
 +
|3.0.5
 
|-
 
|-
 
|snakemake
 
|snakemake
Line 90: Line 115:
 
|-
 
|-
 
|statsmodels
 
|statsmodels
|
+
|0.6.1
 
|0.8.0
 
|0.8.0
 
|0.10.1
 
|0.10.1

Revision as of 16:10, 15 August 2019

List of modules maintained in our production Python versions

The following table provides a list of all supported/maintained Python module versions, per Python version. The table concerns the biotin{2,3}.hpc.uio.no production servers.

Library/module Python 2.7.5 Python 3.5.1 Python 3.6.3
cython 0.23.4 0.25.2 0.29.13
numpy 1.14.2 1.14.0 1.17.0
scipy 1.0.1 1.0.0 1.3.0
matplotlib 2.2.2 2.0.2 3.1.1
pandas 0.22.0 0.20.2 0.25.0
biopython 1.71 1.69 1.74
intervene 0.6.2 0.6.2 0.6.4
kipoi - 0.2.9 -
macs2 2.1.1 - -
patsy 0.4.0 0.4.1 0.5.1
python-dateutil 1.11.0
pymongo 3.5.1 3.5.0 3.5.1
pyparsing 2.4.2
pysam 0.8.3 0.12.0 0.15.3
pybedtools 0.7.9 0.7.9 0.8.0
pybigwig - 0.3.4 0.3.17
rpy2 2.7.3 3.0.5
snakemake - 5.5.4 5.5.4
deepTools 2.4.0_2 2.5.3_2 3.3.0
htseq 0.6.1 0.8.0 0.11.2
seaborn 0.8.0 0.9.0
statsmodels 0.6.1 0.8.0 0.10.1
xgboost 0.71 0.60 0.90