Difference between revisions of "Error correction of Illumina reads using Celera Assembler"
From mn/bio/cees-bioinf
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It is usually useful to preprocess the data you have before assembly. There can be several issues with a dataset: | It is usually useful to preprocess the data you have before assembly. There can be several issues with a dataset: | ||
| − | - adapter sequences | + | - adapter sequences |
| − | - errors | + | - errors |
| − | - duplicated reads | + | - duplicated reads |
In this how-to, we will remove adapter sequences and errors from a large Illumina dataset. | In this how-to, we will remove adapter sequences and errors from a large Illumina dataset. | ||
WORK IN PROGRESS. | WORK IN PROGRESS. | ||
Revision as of 14:49, 13 June 2013
It is usually useful to preprocess the data you have before assembly. There can be several issues with a dataset:
- adapter sequences - errors - duplicated reads
In this how-to, we will remove adapter sequences and errors from a large Illumina dataset.
WORK IN PROGRESS.
