Difference between revisions of "Error correction of Illumina reads using Celera Assembler"

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It is usually useful to preprocess the data you have before assembly. There can be several issues with a dataset:
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It is usually useful to preprocess the data you have before assembly. There can be several issues with a dataset:
 +
 
 
- adapter sequences   
 
- adapter sequences   
 
- errors   
 
- errors   

Revision as of 14:50, 13 June 2013

It is usually useful to preprocess the data you have before assembly. There can be several issues with a dataset:

- adapter sequences - errors - duplicated reads

In this how-to, we will remove adapter sequences and errors from a large Illumina dataset.

WORK IN PROGRESS.