Variant calling on Abel

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Software installation

Programs that are used by a large number of users at CEES are generally maintained by our IT support, who also creates 'modules' for each program installed in /cluster/software. On abel and the cod nodes, the standard way to use software is then to load them as modules with e.g.

module load samtools

The module system allows for different versions of the software. For example, writing

module avail samtools

will list the available versions:

samtools/0.1.18(default)
samtools/0.1.19