Difference between revisions of "Old Main Page"
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− | This wiki is meant as a repository for bioinformatical knowledge at the CEES. It is mainly run by | + | This wiki is meant as a repository for bioinformatical knowledge at the CEES. It is mainly run by Lex, but others are also very welcome to contribute. |
*If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors. | *If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors. | ||
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--> Register through [https://sympa.uio.no/bio.uio.no/ sympa] (all are @bio.uio.no addresses), or ask Lex | --> Register through [https://sympa.uio.no/bio.uio.no/ sympa] (all are @bio.uio.no addresses), or ask Lex | ||
− | <br> | + | <br> |
== Use of the CEES hardware and Abel<br> == | == Use of the CEES hardware and Abel<br> == | ||
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[[Pacbio smrtpipe filtering|Pacbio smrtpipe filtering]] | [[Pacbio smrtpipe filtering|Pacbio smrtpipe filtering]] | ||
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+ | [[PacBio_smrtpipe_commandline|PacBio smrtpipe command-line use]] | ||
[[Submitting to ENA|Submitting sequences to ENA]] | [[Submitting to ENA|Submitting sequences to ENA]] |
Revision as of 07:50, 24 October 2013
This wiki is meant as a repository for bioinformatical knowledge at the CEES. It is mainly run by Lex, but others are also very welcome to contribute.
- If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors.
- If you add a page, please list it below! Tips for adding a page.
Mailing lists
- cees-hpc: to be used for general information related to the area under /projects/cees, the able CPUs and the cod-nodes.
- cod-nodes: to be used to inform about the other cod-node users about CPUs and memory usage of the cod nodes, aka 'cod-node hugging' :-) USIT will also send emails to that list when discs on the nodes are full etc.
- cees-bioinf: to be used for general information regarding bioinformatics at CEES
--> Register through sympa (all are @bio.uio.no addresses), or ask Lex
Use of the CEES hardware and Abel
Organising your computational work
How-to's
PacBio smrtpipe command-line use
Quickly check the insert size distribution of a new sequencing library
Error correction of Illumina reads using merTrim from the Celera Assembler package
Assembly of Illumina paired end reads using Celera Assembler