Difference between revisions of "Old Main Page"

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[[Organising your work|Organising your computational work]]  
 
[[Organising your work|Organising your computational work]]  
  
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[[Useful websites with Unix commands|Useful websites with Unix commands]]
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== How-to's  ==
 
== How-to's  ==

Revision as of 16:15, 30 October 2013

This wiki is meant as a repository for bioinformatical knowledge at the CEES. It is mainly run by Lex, but others are also very welcome to contribute.

  • If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors.
  • If you add a page, please list it below! Tips for adding a page.


Mailing lists

  • cees-hpc: to be used for general information related to the area under /projects/cees, the able CPUs and the cod-nodes. Subscribe here.
  • cod-nodes: to be used to inform about the other cod-node users about CPUs and memory usage of the cod nodes, aka 'cod-node hugging' :-) USIT will also send emails to that list when discs on the nodes are full etc. Subscribe here.
  • cees-bioinf: to be used for general information regarding bioinformatics at CEES. Subscribe here.



Use of the CEES hardware and Abel

User manual cod nodes

Abel use

Organising your computational work

Useful websites with Unix commands


How-to's

PacBio smrtpipe command-line use

Submitting sequences to ENA

Quickly check the insert size distribution of a new sequencing library

Error correction of Illumina reads using merTrim from the Celera Assembler package

Assembly of Illumina paired end reads using Celera Assembler