Difference between revisions of "Old Main Page"

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*If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors.  
 
*If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors.  
 
*If you add a page, please list it below! [[Tips for adding a page|Tips for adding a page]].<br>
 
*If you add a page, please list it below! [[Tips for adding a page|Tips for adding a page]].<br>
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== Mailing lists  ==
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*'''cees-hpc''': to be used for general information related to the area under /projects/cees, the able CPUs and the cod-nodes.
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*'''cod-nodes''': to be used to inform about the other cod-node users about CPUs and memory usage of the cod nodes, aka 'cod-node hugging'&nbsp;:-) USIT will also send emails to that list when discs on the nodes are full etc.
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*'''cees-bioinf''': to be used for general information regarding bioinformatics at CEES
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--&gt; Register through sympa (all are @bio.uio.no addresses), or ask Lex
  
 
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[[Organising your work|Organising your computational work]]  
 
[[Organising your work|Organising your computational work]]  
  
 
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== How-to's  ==
 
== How-to's  ==

Revision as of 10:18, 2 September 2013

This wiki is meant as a repository for bioinformatical knowledge at the CEES. It is mainly run by Karin and Lex, but others are also very welcome to contribute.

  • If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors.
  • If you add a page, please list it below! Tips for adding a page.


Mailing lists

  • cees-hpc: to be used for general information related to the area under /projects/cees, the able CPUs and the cod-nodes.
  • cod-nodes: to be used to inform about the other cod-node users about CPUs and memory usage of the cod nodes, aka 'cod-node hugging' :-) USIT will also send emails to that list when discs on the nodes are full etc.
  • cees-bioinf: to be used for general information regarding bioinformatics at CEES


--> Register through sympa (all are @bio.uio.no addresses), or ask Lex


Use of the CEES hardware and Abel

User manual cod nodes

Abel use

Organising your computational work


How-to's

Pacbio smrtpipe filtering

Submitting sequences to ENA

Quickly check the insert size distribution of a new sequencing library

Error correction of Illumina reads using merTrim from the Celera Assembler package

Assembly of Illumina paired end reads using Celera Assembler