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This wiki is meant as a repository for bioinformatical knowledge at the CEES. It is mainly run by Lex, but others are also very welcome to contribute.
- If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors.
- If you add a page, please list it below! Tips for adding a page.
Contents
Mailing lists
- cees-hpc: to be used for general information related to the area under /projects/cees, the able CPUs and the cod-nodes. Subscribe here.
- cod-nodes: to be used to inform about the other cod-node users about CPUs and memory usage of the cod nodes, aka 'cod-node hugging' :-) USIT will also send emails to that list when discs on the nodes are full etc. Subscribe here.
- cees-bioinf: to be used for general information regarding bioinformatics at CEES. Subscribe here.
- Bioinformatics knowledge present at CEES
Use of the CEES hardware and Abel
Tips, tricks, useful links
Organising your computational work
Useful websites with Unix commands
How-to's
PacBio smrtpipe command-line use
Quickly check the insert size distribution of a new sequencing library
Error correction of Illumina reads using merTrim from the Celera Assembler package
Assembly of Illumina paired end reads using Celera Assembler
File transfer through bioinf3.titan.uio.no
Create modules for softwarecreating_modules
