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| (2 mellomliggende revisjoner av samme bruker vises ikke) |
| Linje 1: |
Linje 1: |
| − | === Getting ATLAS releases to work on RHEL5 x86_64 nodes ===
| + | <tt></tt> |
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| − | | + | === Installing ROOT with Jupyter notebook capability === |
| − | | + | * ROOT is in the EPEL repository (at UiO/FI this should already be set up) |
| − | *For pacman to work you need to install an older 32-bit opensll: <tt>rpm -ivh http://ftp.scientificlinux.org/linux/scientific/51/i386/SL/openssl097a-0.9.7a-9.i386.rpm</tt>
| + | * sudo yum install root root-notebook python3-root python3-devel python3-jupyroot (an admin/superuser needs to do this) |
| − | *To satisfy some packages, especially event generation: <tt>yum install libgfortran-4.1.2-44.el5.i386</tt>
| + | * pip3 install --user jupyter juypterlab metakernel (this you can do as a normal user) |
| − | *You need to install blas: <tt>yum install blas.i386</tt> and <tt>yum install blas-devel.i386</tt>
| + | ** This will create ~/.local - later you can move the directory somewhere else and softlink to it, i.e. ln -s /scratch/.local ~/.local |
| − | *To get /usr/lib/libreadline.so.4 (also needed for 32-bit Linux) do <tt>rpm -ivh http://linuxsoft.cern.ch/cern/slc5X/i386/SL/compat-readline43-4.3-3.i386.rpm</tt>
| + | * Make sure ~/.local/bin is in your PATH |
| − | *You need 32-bit gcc 3.4 (also needed for 32-bit Linux): <tt>yum install compat-gcc-34</tt>
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| − | *You need 32-bit g++ 3.4 (also needed for 32-bit Linux): <tt>yum install compat-gcc-34-c++</tt>
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| − | *You may need to install 32-bit popt: <tt>yum install popt.i386</tt>
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| − | *In order to analyze luminosity blocks in real data libxml2-devel is needed: <tt>yum install libxml2-devel</tt>
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| − | | |
| − | === Getting the I686-SLC5-GCC43 kits to validate (and run) on RHEL5 ===
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| − | | |
| − | *Install the pacman kit for gcc43, see https://twiki.cern.ch/twiki/bin/view/Atlas/RPMCompatSLC5#Run_SLC4_32bit_binaries_on_SLC5
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| − | *You probably need to <tt>ln -s /usr/lib/libg2c.so.0.0.0 /usr/lib/libg2c.so </tt>
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| − | *You probably need to <tt>ln -s /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libgcc_s_32.so /lib/libgcc_s_32.so</tt>
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| − | | |
| − | === Installing root and enabling the xrootd service (needed for proof) === | |
| − | | |
| − | *on RHEL5 x86_64 systems: (gcc 4.3 is too advanced for UiO desktops) | |
| − | <pre>tar -xvzf /mn/kvant/hep/linux/root/root_v5.22.00.Linux-slc5-gcc3.4.tar.gz -C /opt
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| − | </pre>
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| − | *Assume standard setup is on default system (e.g. scalar.uio.no) and $node is the node you want to install on. Of course if you are logged on to $node all the ssh'ing is not needed
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| − | <pre>scp /etc/sysconfig/xrootd $node:/etc/sysconfig/
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| − | scp /etc/xpd.cf $node:/etc/
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| − | scp /etc/rc.d/init.d/xrootd $node:/etc/rc.d/init.d/
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| − | ssh $node chkconfig --add xrootd
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| − | ssh $node chkconfig --level 35 xrootd on
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| − | </pre>
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| − | *Note, xrootd runs under read account (as of May 2009)
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| − | <pre>ssh $node mkdir /var/log/xrootd
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| − | ssh $node chown read:fysepf /var/log/xrootd
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| − | </pre>
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| − | *Edit /etc/xpd.cf and restart xrootd to add a worker node.
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| − | *Redistribute /etc/cpd.cf as well (have to find a simpler but reliable system for this
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| − | <pre>/sbin/service xrootd start
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| − | </pre>
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| − | <br>
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| − | | |
| − | === Installing VirtualBox ===
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| − | | |
| − | *Download and install the appropriate rpm from http://download.virtualbox.org/virtualbox
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| − | *Remove the new line with vboxusers from /etc/group
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| − | *Add the host's username to the vboxusers group, e.g.
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| − | <pre>echo vboxusers:x:15522:esbenlu >> /etc/group<br>echo vboxusers:x:15522:esbenlu >> /etc/group.local
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| − | </pre>
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| − | *Finalize the vbox setup:
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| − | <pre>/etc/init.d/vboxdrv setup
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| − | </pre>
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| − | <br>
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| − | | |
| − | === Installing ARC client on RHEL5 boxes (as superuser) ===
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| − | | |
| − | *See http://download.nordugrid.org/repos.html
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| − | *Set up the extra packages for Enterprise Linux ([http://www2.usit.uio.no/it/unix/linux/doc/epel.html epel]):
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| − | <pre>rpm -Uvh http://download.fedora.redhat.com/pub/epel/5/i386/epel-release-5-4.noarch.rpm</pre>
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| − | *Typical /etc/yum.repos.d/nordugrid:
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| − | <pre>[nordugrid] name=NorduGrid - $basearch - stable
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| − | baseurl=http://download.nordugrid.org/repos/redhat/$releasever/$basearch/stable
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| − | enabled=1
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| − | gpgcheck=1
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| − | gpgkey=http://download.nordugrid.org/RPM-GPG-KEY-nordugrid;
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| − | </pre>
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| − | *<tt>yum groupinstall "ARC Client"</tt> to install the client s/w | |
| − | *<tt>yum install nordugrid-arc-ca-utils</tt> to install the missing Certificate Authority utilities
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| − | *<tt>/opt/nordugrid/sbin/grid-update-crls</tt> to jumpstart the first update of the [http://searchsecurity.techtarget.com/sDefinition/0,,sid14_gci803160,00.html Certificate Revocation Lists] - after that there is a cron that does the job automatically.
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| − | *<tt>yum install lfc-devel lfc-python></tt> to get LFC needed by the ATLAS DQ2 commands (this should cure "python LFC exception [Python bindings missing]").
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| − | | |
| − | === Installing an ATLAS software release (NEW 03.02.2010) ===
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| − | | |
| − | *Decide where to install the software - this is "swdir". | |
| − | *Decide where to install the runtime scripts, this is "rtedir".
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| − | *Download the install scripts and <tt>chmod a+x</tt> them afterwards
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| − | **http://www-f9.ijs.si/atlas/grid/script/AtlasInstall.sh
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| − | **http://www-f9.ijs.si/atlas/grid/script/sw-mgr
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| − | *Install an appropriate gcc432 compiler (use "uname -m" to find yours). You can't use the i686 gcc-kit on a x86_64 system! When installed in this way the atlas release(s) you install later will refer to them implicitly - you shouldn't need to source them yourself unless you are doing non-atlas program development. Note that SLC4 is no longer the default platform and will soon be discontinued (though if you must have older releases you will find SLC4 kits).
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| − | **<tt>./AtlasInstall.sh --release 4.3.2 --project gcc --arch I686-SLC5-GCC43-OPT --rtedir /my/runtime --swdir /my/atlas/software</tt> | |
| − | **<tt>./AtlasInstall.sh --release 4.3.2 --project gcc --arch X86_64-SLC5-GCC43-OPT --rtedir /my/runtime --swdir /my/atlas/software</tt>
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| − | **<tt>./AtlasInstall.sh</tt> with no arguments will give you help.
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| − | *Install the kit you want (x86_64 kits are not yet validated for physics). The i686 kit will work on both i686 and x86_64 systems. Beware that the DBRelease needs to be modern enough. Check the release notes for your release in http://atlas-computing.web.cern.ch/atlas-computing/projects/releases/status/ (and be warned, these pages are written by hand and the DBRelease is often wrong).
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| − | **Example: <tt>./AtlasInstall.sh --release 15.6.3 --project AtlasOffline --arch I686-SLC5-GCC43-OPT --rtedir /my/runtime --swdir /my/atlas/software --dbrelease 8.5.1</tt>
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| − | *If you need a production cache the next step is:
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| − | **<tt>./AtlasInstall.sh --release 15.6.3 --project AtlasOffline --arch I686-SLC5-GCC43-OPT --rtedir /my/runtime --swdir /my/atlas/software --dbrelease 8.5.1</tt>
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| − | **If you want a Tier0 cache instead just change the project to AtlasTier0.
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| − | *If your OS is x86_64 there may be some missing 32-bit libraries, my "favorites" are from the blas, blas-devel, libgfortran and libf2c packages. See [[Computing System Administration#Getting_ATLAS_releases_to_work_on_RHEL5_x86_64_nodes]] and the [https://twiki.cern.ch/twiki/bin/view/Atlas/RPMCompatSLC5 ATLAS wiki] for more details.
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| − | | |
| − | === ATLAS VO Registration and Management ===
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| − | | |
| − | [https://lcg-voms.cern.ch:8443/vo/atlas/vomrs?path=/RootNode&action=execute This site] is used for registering atlas VO grid resource users and for managing information about their affiliation with the ATLAS VO and their permissions regarding use of grid resources.<br>
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| − | | |
| − | === Setting up VOMS for US ATLAS certificates ===
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| − | | |
| − | Create a file
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| − | <pre>/etc/grid-security/vomsdir/atlas/vo.racf.bnl.gov.lsc
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| − | </pre>
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| − | The file currently needs to be named
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| − | <pre>/etc/grid-security/vomsdir/atlas/vo02.racf.bnl.gov.lsc
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| − | </pre>
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| − | The file name is determined from the output of "voms-proxy-info -uri".Better create _both_ files for now. This is due to a misconfiguration of the BNL VOMS server. The admins have been informed (10.03.10).
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| − | | |
| − | The contents:
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| − | <pre>/DC=org/DC=doegrids/OU=Services/CN=vo.racf.bnl.gov
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| − | /DC=org/DC=DOEGrids/OU=Certificate Authorities/CN=DOEGrids CA 1
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| − | </pre>
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| − | Then you can stop bothering with the certificate for racf.bnl (which should be in the lcg-vomscerts package and which expires once a year).
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| − | | |
| − | === Installation of a new release of DQ2Clients ===
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| − | | |
| − | *You had better set umask to 022 or nobody else will be able to read files or execute any commands!
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| − | *Typical install command is <tt></tt>
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| − | | |
| − | <tt>pacman -trust-all-caches -allow tar-overwrite -get http://atlas.web.cern.ch/Atlas/GROUPS/DATABASE/project/ddm/releases/pacman/cache:DQ2Clients</tt>
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| − | | |
| − | *Additional documentation is [https://twiki.cern.ch/twiki/bin/view/Atlas/DQ2Clients here] - there is also a [https://twiki.cern.ch/twiki/bin/view/Atlas/DQ2ClientsHowTo howto].
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| − | | |
| − | === Getting COMPHEP to work on 64-bit RHEL5 ===
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| − | <pre>yum install compat-gcc-34-g77 g2clib-devel
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| − | cd /usr/lib64;ln -s libg2c.so.0.0.0 libg2c.so
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| − | </pre>
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| − | The latter assumes that a similar fix for /usr/lib (32-bit) has already been done (see above).
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| − | | |
| − | === Installing a new DBRelease in an existing athena release ===
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| − | | |
| − | *Set up pacman, e.g. <tt>/shared/SOFTWARE/APPS/HEP/pacman/pacman-3.29/setup.sh </tt>
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| − | *<tt>cd</tt> to the release directory, e.g. <tt>/shared/SOFTWARE/APPS/HEP/atlas/releases/15.6.9 </tt>
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| − | *Install the new DBRelease, e.g. <tt>pacman -get http://atlas.web.cern.ch/Atlas/GROUPS/DATABASE/pacman4/DBRelease/:DBRelease-10.7.1 </tt>
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| − | *Make sure the ownership of the updated softlink DBRelease/current and e.g. DBRelease/10.7.1 are correct. | |
| − | *And you might as well check that DBRelease/current softlinks to the DBRelease you intended...
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| − | | |
| − | === Getting AFS and k* commands to work ===
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| − | | |
| − | *Copy <tt>/etc/krb.realms</tt> and <tt>/etc/krb5.conf</tt> from scalar to the new node.
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