Difference between revisions of "PBcR: Links"
From mn/ibv/bioinfwiki
(Created page with "This is the official wiki page for the PBcR pipeline: [http://wgs-assembler.sourceforge.net/wiki/index.php/PBcR http://wgs-assembler.sourceforge.net/wiki/index.php/PBcR]...") |
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− | This is the official wiki page for the PBcR pipeline: | + | This is the official wiki page for the PBcR pipeline: |
[http://wgs-assembler.sourceforge.net/wiki/index.php/PBcR http://wgs-assembler.sourceforge.net/wiki/index.php/PBcR] | [http://wgs-assembler.sourceforge.net/wiki/index.php/PBcR http://wgs-assembler.sourceforge.net/wiki/index.php/PBcR] | ||
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− | This page provides a Celera Assembler step-by-step walkthrough: | + | This page provides a Celera Assembler step-by-step walkthrough: |
[http://wgs-assembler.sourceforge.net/wiki/index.php/RunCA_Dissection http://wgs-assembler.sourceforge.net/wiki/index.php/RunCA_Dissection] | [http://wgs-assembler.sourceforge.net/wiki/index.php/RunCA_Dissection http://wgs-assembler.sourceforge.net/wiki/index.php/RunCA_Dissection] | ||
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− | This document describes the output files of Celera Assembler: | + | This document describes the output files of Celera Assembler: |
− | [[Ftp:ftp://ftp.ccb.jhu.edu/pub/data/assembly/ | + | [[Ftp:ftp://ftp.ccb.jhu.edu/pub/data/assembly/C briggsae/QC-file.html|ftp://ftp.ccb.jhu.edu/pub/data/assembly/C_briggsae/QC-file.html]] |
− | This page describes assembly using the PBcR pipeline: | + | This page describes assembly using the PBcR pipeline: |
[http://cbcb.umd.edu/software/PBcR/dmel.html http://cbcb.umd.edu/software/PBcR/dmel.html] | [http://cbcb.umd.edu/software/PBcR/dmel.html http://cbcb.umd.edu/software/PBcR/dmel.html] | ||
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− | This is the PBcR sourceforge page: | + | This is the PBcR sourceforge page: |
[http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler] | [http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler] | ||
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+ | This website explains the MHAP algorithm: | ||
+ | |||
+ | http://mhap.readthedocs.org/en/v1.5b1/ |
Latest revision as of 15:51, 4 May 2015
This is the official wiki page for the PBcR pipeline:
http://wgs-assembler.sourceforge.net/wiki/index.php/PBcR
This page provides a Celera Assembler step-by-step walkthrough:
http://wgs-assembler.sourceforge.net/wiki/index.php/RunCA_Dissection
This document describes the output files of Celera Assembler:
ftp://ftp.ccb.jhu.edu/pub/data/assembly/C_briggsae/QC-file.html
This page describes assembly using the PBcR pipeline:
http://cbcb.umd.edu/software/PBcR/dmel.html
This is the PBcR sourceforge page:
http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler
This website explains the MHAP algorithm: