Difference between revisions of "Main Page"
From mn/ibv/bioinfwiki
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= BLAST: the Basic Local Alignment Search Tool = | = BLAST: the Basic Local Alignment Search Tool = | ||
| − | == [[ | + | == [[BLAST for dummies|BLAST for dummies]] == |
| − | === [[ | + | === [[BLAST for dummies#Sequence similarity searches: queries and hits|Sequence similarity searches: queries and hits]] === |
| − | === The BLAST database === | + | === [[BLAST_for_dummies#The_BLAST_database|The BLAST database]] === |
=== Aligning query and hit sequences === | === Aligning query and hit sequences === | ||
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=== Understanding the BLAST output === | === Understanding the BLAST output === | ||
| − | == [[ | + | == [[Measuring BLAST hits|Measuring BLAST hits]] == |
=== Similarity: bitscores === | === Similarity: bitscores === | ||
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=== Similarity vs. significance === | === Similarity vs. significance === | ||
| − | == [[ | + | == [[Blastn vs. blastp|blastn vs. blastp]] == |
| − | == [[Similarity, | + | == [[Similarity, homology and orthology|Similarity, homology and orthology]] == |
| − | == [[ | + | == [[Improving BLAST hits|Improving BLAST hits]] == |
=== Adjusting BLAST search parameters === | === Adjusting BLAST search parameters === | ||
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=== Adding query sequences === | === Adding query sequences === | ||
| − | == [[ | + | == [[How to run BLAST|How to run BLAST]] == |
=== Running BLAST on the NCBI website === | === Running BLAST on the NCBI website === | ||
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=== Running BLAST manually from the command line === | === Running BLAST manually from the command line === | ||
| − | == [[ | + | == [[Computer directories and the PATH|Computer directories and the PATH]] == |
=== The current directory === | === The current directory === | ||
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=== The PATH === | === The PATH === | ||
| − | == [[ | + | == [[Running BLAST from the command-line|Running BLAST from the command-line]] == |
=== A simple BLAST search === | === A simple BLAST search === | ||
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=== Creating a custom BLAST database === | === Creating a custom BLAST database === | ||
| − | == [[ | + | == [[General tips for using BLAST on Abel|General tips for using BLAST on Abel]] == |
=== Submit a BLAST search job script === | === Submit a BLAST search job script === | ||
Revision as of 13:47, 23 February 2015
Contents
- 1 BLAST: the Basic Local Alignment Search Tool
