Difference between revisions of "Main Page"
From mn/ibv/bioinfwiki
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= BLAST: the Basic Local Alignment Search Tool = | = BLAST: the Basic Local Alignment Search Tool = | ||
− | == BLAST for dummies == | + | == [[BLAST_for_dummies|BLAST for dummies]] == |
=== Sequence similarity searches: queries and hits === | === Sequence similarity searches: queries and hits === | ||
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=== Understanding the BLAST output === | === Understanding the BLAST output === | ||
− | == Measuring BLAST hits == | + | == [[Measuring_BLAST_hits|Measuring BLAST hits]] == |
=== Similarity: bitscores === | === Similarity: bitscores === | ||
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=== Similarity vs. significance === | === Similarity vs. significance === | ||
− | == blastn vs. blastp == | + | == [[blastn_vs_blastp|blastn vs. blastp]] == |
− | == Similarity, homology and orthology == | + | == [[Similarity_homology_and_orthology|Similarity, homology and orthology]] == |
− | == Improving BLAST hits == | + | == [[Improving_BLAST_hits|Improving BLAST hits]] == |
=== Adjusting BLAST search parameters === | === Adjusting BLAST search parameters === | ||
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=== Adding query sequences === | === Adding query sequences === | ||
− | == How to run BLAST == | + | == [[How_to_run_BLAST|How to run BLAST]] == |
=== Running BLAST on the NCBI website === | === Running BLAST on the NCBI website === | ||
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=== Running BLAST manually from the command line === | === Running BLAST manually from the command line === | ||
− | == Computer directories and the PATH == | + | == [[Computer_directories_and_the_PATH|Computer directories and the PATH]] == |
=== The current directory === | === The current directory === | ||
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=== The PATH === | === The PATH === | ||
− | == Running BLAST from the command-line == | + | == [[Running_BLAST_from_the_command-line|Running BLAST from the command-line]] == |
=== A simple BLAST search === | === A simple BLAST search === | ||
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=== Creating a custom BLAST database === | === Creating a custom BLAST database === | ||
− | == General tips for using BLAST on Abel == | + | == [[General_tips_for_using_BLAST_on_Abel|General tips for using BLAST on Abel]] == |
=== Submit a BLAST search job script === | === Submit a BLAST search job script === |
Revision as of 12:20, 23 February 2015
Contents
- 1 BLAST: the Basic Local Alignment Search Tool