Difference between revisions of "Main Page"
From mn/ibv/bioinfwiki
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| − | = BLAST | + | = BLAST: the Basic Local Alignment Search Tool = |
| − | == | + | == BLAST for dummies == |
| − | == | + | === Sequence similarity searches: queries and hits === |
| − | == | + | === The BLAST database === |
| − | == | + | === Aligning query and hit sequences === |
| − | = | + | === Understanding the BLAST output === |
| − | == | + | == Measuring BLAST hits == |
| − | == | + | === Similarity: bitscores === |
| − | == | + | === Significance: E-values === |
| − | = | + | === Similarity vs. significance === |
| − | = | + | == blastn vs. blastp == |
| − | = | + | == Similarity, homology and orthology == |
| − | == | + | == Improving BLAST hits == |
| − | == | + | === Adjusting BLAST search parameters === |
| − | == | + | === Reducing the database size === |
| − | == | + | === Increasing the quality of the alignment === |
| − | == | + | === Using addition positional information === |
| − | = | + | === Adding query sequences === |
| − | == | + | == How to run BLAST == |
| − | == Running BLAST on the | + | === Running BLAST on the NCBI website === |
| − | == Running BLAST | + | === Running BLAST on the UoO Lifeportal === |
| − | = | + | === Running BLAST manually from the command line === |
| − | == | + | == Computer directories and the PATH == |
| − | == The | + | === The current directory === |
| − | = | + | === The PATH === |
| − | == | + | == Running BLAST from the command-line == |
| − | == | + | === A simple BLAST search === |
| − | = | + | === Creating a custom BLAST database === |
| − | == | + | == General tips for using BLAST on Abel == |
| − | == | + | === Submit a BLAST search job script === |
| − | == Use the “freebee” system == | + | === Use “qlogin” to directly interact with Abel during job execution === |
| + | |||
| + | === Use the “freebee” system === | ||
Revision as of 12:16, 23 February 2015
Contents
- 1 BLAST: the Basic Local Alignment Search Tool
