Difference between revisions of "Additional curriculum"

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(Required reading material for the course)
(Required reading material for the course)
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*J. Carlsson ''et al.'', "Ligand discovery from a dopamine D<sub>3</sub> receptor homology model and crystal structure", [http://dx.doi.org/10.1038/nchembio.662 Nat. Chem. Biol. '''7''', 769 (2011)]  
 
*J. Carlsson ''et al.'', "Ligand discovery from a dopamine D<sub>3</sub> receptor homology model and crystal structure", [http://dx.doi.org/10.1038/nchembio.662 Nat. Chem. Biol. '''7''', 769 (2011)]  
 
*J. Paulsen ''et al.,'' "Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements", [http://dx.doi.org/10.1093/nar/gkt227 Nucleic Acids Res. '''41''', 5164 (2013)]  
 
*J. Paulsen ''et al.,'' "Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements", [http://dx.doi.org/10.1093/nar/gkt227 Nucleic Acids Res. '''41''', 5164 (2013)]  
*R.M. Kuhn'' et al.'', "The UCSC genome browser and associated tools", [http://dx.doi.org/10.1093/bib/bbs038 Brief. Bioinform. '''14''', 144 (2013)]
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*R.M. Kuhn''et al.'', "The UCSC genome browser and associated tools", [http://dx.doi.org/10.1093/bib/bbs038 Brief. Bioinform. '''14''', 144 (2013)]  
 
*J. Goecks ''et al''., "Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences", [http://dx.doi.org/10.1186/gb-2010-11-8-r86 Genome Biol. '''11''', R86 (2010)]  
 
*J. Goecks ''et al''., "Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences", [http://dx.doi.org/10.1186/gb-2010-11-8-r86 Genome Biol. '''11''', R86 (2010)]  
 
*G.K. Sandve ''et al.'', "Ten Simple Rules for reproducible computational Research", [http://dx.doi.org/10.1371/journal.pcbi.1003285 PLoS Comput. Biol. '''9''', e1003285 (2013)]  
 
*G.K. Sandve ''et al.'', "Ten Simple Rules for reproducible computational Research", [http://dx.doi.org/10.1371/journal.pcbi.1003285 PLoS Comput. Biol. '''9''', e1003285 (2013)]  
 
*G.K. Sandve ''et al.'', "The Genomic HyperBrowser: an analysis web server for genome-scale data", [http://dx.doi.org/10.1093/nar/gkt342 Nucleic Acids Res. '''41''', W133 (2013)]  
 
*G.K. Sandve ''et al.'', "The Genomic HyperBrowser: an analysis web server for genome-scale data", [http://dx.doi.org/10.1093/nar/gkt342 Nucleic Acids Res. '''41''', W133 (2013)]  
 
*N. Nagarajan &amp; M. Pop, "Sequence assembly demystified", [http://dx.doi.org/10.1038/nrg3367 Nat. Rev. Genet. '''14''', 157 (2013)]  
 
*N. Nagarajan &amp; M. Pop, "Sequence assembly demystified", [http://dx.doi.org/10.1038/nrg3367 Nat. Rev. Genet. '''14''', 157 (2013)]  
*...
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*D.W. Huang ''et al.'', "Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources", Nat. Protoc. '''4''', 44 (2009)
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*...  
 
*More articles may still appear on this list!
 
*More articles may still appear on this list!

Revision as of 19:16, 11 November 2013

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Required reading material for the course

This list is not yet finished!

The following articles/reviews/written material is part of the curriculum for MBV-INF4410, MBV-INF9410, and MBV-INF9410A: