Difference between revisions of "INF-BIOX121 H14 course material"

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== File formats ==
 
== File formats ==
  
[https://wiki.uio.no/projects/clsi/images/5/5c/HTS_2014_Day01_File_formats.pdf HTS_2014_Day01_File_formats.pdf]
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[[Media:HTS_2014_Day01_File_formats.pdf|File formats presentation]]
  
[https://wiki.uio.no/projects/clsi/images/3/37/HTS_2014_Day01_File_formats-exercises.pdf HTS_2014_Day01_File_formats-exercises.pdf]
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[[Media:HTS_2014_Day01_File_formats-exercises.pdf|File formats exercises]]
  
 
== Quality control ==
 
== Quality control ==

Revision as of 14:57, 14 October 2014

Introduction

HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf

File formats

File formats presentation

File formats exercises

Quality control

Read QC practical

Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/

Some more information on 'duplication levels': https://www.biostars.org/p/107402/

miRNA

microRNA theory

Intro Galaxy Lifeportal

miRNA analysis Lifeportal

De novo assembly

See this github repository.

How to become an efficient bioinformatician

Lex Nederbragt: Thoughts on reproducibility

Jon Lærdahl: Oslo Bioinformatics Core Facility & Elixir Noway

Jon Lærdahl: Bioinformatics resources on the web

RNAseq

Variant calling

ChIP-seq

Statistical genomics