Difference between revisions of "INF-BIOX121 H14 course material"
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See [https://github.com/lexnederbragt/INF-BIOx121_fall2014_de_novo_assembly this github repository]. | See [https://github.com/lexnederbragt/INF-BIOx121_fall2014_de_novo_assembly this github repository]. | ||
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| + | Also, have a look at [http://www.slideshare.net/flxlex/assembly-before-and-after this presentation] an different aspects of assembly we didn't manage to go through. | ||
== How to become an efficient bioinformatician == | == How to become an efficient bioinformatician == | ||
Revision as of 12:05, 18 October 2014
Contents
Introduction
HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf
File formats
Quality control
Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
Some more information on 'duplication levels': https://www.biostars.org/p/107402/
miRNA
De novo assembly
Also, have a look at this presentation an different aspects of assembly we didn't manage to go through.
How to become an efficient bioinformatician
Lex Nederbragt: Thoughts on reproducibility
Jon Lærdahl: Oslo Bioinformatics Core Facility & Elixir Noway
Jon Lærdahl: Bioinformatics resources on the web
