Difference between revisions of "INF-BIOX121 H15 curriculum"
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+ | [https://wiki.uio.no/projects/clsi/images/7/74/Assembly_algorithms_for_next-generation_sequencing_data.pdf '''Miller ''et al.'',''' Assembly algorithms for next-generation sequencing data ''Genomics.'' 2010 ] | ||
Coelacanth genome: http://www.nature.com/nature/journal/v496/n7445/full/nature12027.html | Coelacanth genome: http://www.nature.com/nature/journal/v496/n7445/full/nature12027.html | ||
Revision as of 12:54, 26 August 2015
Work in progress, expected to be complete no later than 1st of September, 2015.
Contents
Curriculum for INF-BIO5/9121
The fields of bioinformatics and genomics are in rapid development. Hence, the curriculum for this course is not a book, but a set of articles. We have put together two sets of articles for this course. The first comprises the core curriculum, these are articles from which questions for the exam might be pulled. The second set is a list of articles that will give more in-depth information. These articles will not be used for the exam, but still represent highly useful and relevant knowledge that we highly recommend reading.
Core curriculum
Sequencing
Assembly
Miller et al., Assembly algorithms for next-generation sequencing data Genomics. 2010 Coelacanth genome: http://www.nature.com/nature/journal/v496/n7445/full/nature12027.html
Cichlid genomes: http://www.nature.com/nature/journal/v513/n7518/full/nature13726.html
Recommended reading
Sequencing
Suggested Reading for Sequencing in general
Metzker http://dx.doi.org/10.1038/nrg2626 (står nevnt på 2014 wiki)
http://www.genomebiology.com/2013/14/5/R51
website: NGS Field Guide http://www.molecularecologist.com/next-gen-fieldguide-2014/
Assembly
http://www.ncbi.nlm.nih.gov/pubmed/25553065
http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1935.html
Og selvfølgelig Star et al 2011 :-) http://www.nature.com/nature/journal/v477/n7363/full/nature10342.html