Difference between revisions of "INF-BIOX120 H13 curriculum"
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=== Assembly === | === Assembly === | ||
| − | Niranjan Nagarajan & Mihai Pop<br>Nature Reviews Genetics 14, 157-167<br>[http://www.nature.com/nrg/journal/v14/n3/full/nrg3367.html Sequence assembly demystified] | + | Niranjan Nagarajan & Mihai Pop<br>Nature Reviews Genetics 14, 157-167<br>[http://www.nature.com/nrg/journal/v14/n3/full/nrg3367.html Sequence assembly demystified]<br> |
| − | + | Jason R. Miller, Sergey Koren, Granger Sutton<br>Genomics Volume 95, Issue 6, June 2010, Pages 315–327<br>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874646/ Assembly algorithms for next-generation sequencing data]<br> | |
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| − | Jason R. Miller, Sergey Koren, Granger Sutton<br>Genomics Volume 95, Issue 6, June 2010, Pages 315–327<br>[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874646/ Assembly algorithms for next-generation sequencing data]<br> | ||
Adam M Phillippy, Michael C Schatz and Mihai Pop<br>Genome Biology 2008, 9:R55<br>[http://genomebiology.com/content/9/3/R55 Genome assembly forensics: finding the elusive mis-assembly]<br> | Adam M Phillippy, Michael C Schatz and Mihai Pop<br>Genome Biology 2008, 9:R55<br>[http://genomebiology.com/content/9/3/R55 Genome assembly forensics: finding the elusive mis-assembly]<br> | ||
Revision as of 13:14, 29 August 2013
Required curriculum for credit students
The curriculum consists of these four papers:
Metzker, ML
Nat Rev Genet. 2010 Jan;11(1):31-46
Sequencing technologies - the next generation.
Nielsen R, Paul JS, Albrechtsen A, Song YS.
Nat Rev Genet. 2011 Jun;12(6):443-51
Genotype and SNP calling from next-generation sequencing data.
Oshlack A, Robinson MD, Young MD.
Genome Biol. 2010;11(12):220
From RNA-seq reads to differential expression results.
Flicek P, Birney E.
Nat Methods. 2009 Nov;6
Sense from sequence reads : methods for alignment and assembly
Suggested reading
Assembly
Niranjan Nagarajan & Mihai Pop
Nature Reviews Genetics 14, 157-167
Sequence assembly demystified
Jason R. Miller, Sergey Koren, Granger Sutton
Genomics Volume 95, Issue 6, June 2010, Pages 315–327
Assembly algorithms for next-generation sequencing data
Adam M Phillippy, Michael C Schatz and Mihai Pop
Genome Biology 2008, 9:R55
Genome assembly forensics: finding the elusive mis-assembly
