Difference between revisions of "INF-BIOX121 H14 course material"

Revision as of 14:52, 14 October 2014

Introduction

HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf

File formats

HTS_2014_Day01_File_formats.pdf

HTS_2014_Day01_File_formats-exercises.pdf

Quality control

HTS_2014_read_qc.pdf

Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/

Some more information on 'duplication levels': [1]

miRNA

microRNA theory

HTS_2014_Intro_Galaxy_Lifeportal.pdf

HTS_2014_miRNA_analysis_Lifeportal_14_final.pdf

De novo assembly

See this github repository.

How to become an efficient bioinformatician

Lex Nederbragt: Thoughts on reproducibility

Jon Lærdahl: Oslo Bioinformatics Core Facility & Elixir Noway

Jon Lærdahl: Bioinformatics resources on the web

RNAseq

Variant calling

ChIP-seq

Statistical genomics