Difference between revisions of "INF-BIOX121 H14 course material"
From projects/clsi
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[[Media:HTS 2014 miRNA analysis Lifeportal 14 final.pdf|miRNA analysis Lifeportal]] | [[Media:HTS 2014 miRNA analysis Lifeportal 14 final.pdf|miRNA analysis Lifeportal]] | ||
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+ | [[Media:EdgeR.pdf|EdgeR]] | ||
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+ | [[Media:HTS 2014 microRNA analysis INFBIO 14.pdf|microRNA analysis]] | ||
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+ | [[Media:HTS 2014 miRNA analysis CL.pdf|miRNA analysis Command Line]] | ||
== De novo assembly == | == De novo assembly == |
Revision as of 16:45, 15 October 2014
Contents
Introduction
HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf
File formats
Quality control
Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
Some more information on 'duplication levels': https://www.biostars.org/p/107402/
miRNA
De novo assembly
How to become an efficient bioinformatician
Lex Nederbragt: Thoughts on reproducibility
Jon Lærdahl: Oslo Bioinformatics Core Facility & Elixir Noway
Jon Lærdahl: Bioinformatics resources on the web