Difference between revisions of "INF-BIOX121 H14 course material"
From projects/clsi
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== File formats == | == File formats == | ||
| − | [[Media: | + | [[Media:HTS 2014 Day01 File formats.pdf|File formats presentation]] |
| − | [[Media: | + | [[Media:HTS 2014 Day01 File formats-exercises.pdf|File formats exercises]] |
== Quality control == | == Quality control == | ||
| Line 47: | Line 47: | ||
== RNAseq == | == RNAseq == | ||
| − | [[Media: | + | [[Media: HTS 2014 RNAseq introduction.pdf|RNAseq introduction]] |
| − | [[Media: | + | [[Media: HTS 2014 RNAseq applications.pdf|RNAseq applications]] |
| + | |||
| + | == ChIP-seq == | ||
| + | |||
| + | [[Media:HTS 2014 chip-seq-practical.pdf|ChIP-seq practical]] | ||
== Variant calling == | == Variant calling == | ||
| − | |||
| − | |||
== Statistical genomics == | == Statistical genomics == | ||
Revision as of 08:57, 20 October 2014
Contents
Introduction
HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf
File formats
Quality control
Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
Some more information on 'duplication levels': https://www.biostars.org/p/107402/
miRNA
De novo assembly
Also, have a look at this presentation on different aspects of assembly we didn't manage to go through.
How to become an efficient bioinformatician
Lex Nederbragt: Thoughts on reproducibility
Jon Lærdahl: Oslo Bioinformatics Core Facility & Elixir Noway
Jon Lærdahl: Bioinformatics resources on the web
