Difference between revisions of "INF-BIOX121 H14 course material"
From projects/clsi
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== Variant calling == | == Variant calling == | ||
| − | [[Media: | + | [[Media:HTS 2014 variantCallingCourse sept2014 Part1.pdf|Variant Calling Part 1]] |
| + | [[Media:HTS 2014 variantCallingCourse sept2014 Part2.pdf|Variant Calling Part 2]] | ||
== Statistical genomics == | == Statistical genomics == | ||
Revision as of 16:18, 22 October 2014
Contents
Introduction
HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf
File formats
Quality control
Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
Some more information on 'duplication levels': https://www.biostars.org/p/107402/
miRNA
De novo assembly
Also, have a look at this presentation on different aspects of assembly we didn't manage to go through.
How to become an efficient bioinformatician
Lex Nederbragt: Thoughts on reproducibility
Jon Lærdahl: Oslo Bioinformatics Core Facility & Elixir Noway
Jon Lærdahl: Bioinformatics resources on the web
Rolf Skotheim: Selected bioinformatics approaches to identify RNA changes in cancer
RNAseq
ChIP-seq
Variant calling
Variant Calling Part 1 Variant Calling Part 2
