Difference between revisions of "INF-BIOX121 H14 course material"
From projects/clsi
Line 41: | Line 41: | ||
Lex Nederbragt: [[Media:141014 Thoughts on reproducibility INF BIOx121.pptx.pdf|Thoughts on reproducibility]] | Lex Nederbragt: [[Media:141014 Thoughts on reproducibility INF BIOx121.pptx.pdf|Thoughts on reproducibility]] | ||
− | Karin Lagesen: [ | + | Karin Lagesen: [https://wiki.uio.no/projects/clsi/images/a/af/Dataressurser.pdf Working with data] |
Jon Lærdahl: [[Media:BioinformaticsCoreFacilityOutreach-E1.pdf|Oslo Bioinformatics Core Facility & Elixir Noway]] | Jon Lærdahl: [[Media:BioinformaticsCoreFacilityOutreach-E1.pdf|Oslo Bioinformatics Core Facility & Elixir Noway]] |
Revision as of 20:46, 22 October 2014
Contents
Introduction
HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf
File formats
Quality control
Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
Some more information on 'duplication levels': https://www.biostars.org/p/107402/
miRNA
De novo assembly
Also, have a look at this presentation on different aspects of assembly we didn't manage to go through.
How to become an efficient bioinformatician
Lex Nederbragt: Thoughts on reproducibility
Karin Lagesen: Working with data
Jon Lærdahl: Oslo Bioinformatics Core Facility & Elixir Noway
Jon Lærdahl: Bioinformatics resources on the web
Rolf Skotheim: Selected bioinformatics approaches to identify RNA changes in cancer