MBV-INFX410 2016
Contents
Bioinformatics for Molecular Biology - 2016
UNDER CONSTRUCTION!!!!!
All students must be present at the start of the course, at 09:15, on November 14. Missing students will not be allowed to follow the course or to take the exam. If you for some reason are not able to attend, please contact Jon Bråte (See contact details below).
This is the wiki for the courses MBV-INF4410 and MBV-INF9410 offered by the Department of Biosciences and Department of Informatics at the University of Oslo (UiO). Both MBV-INF4410 (M.Sc. level) and MBV-INF9410 (Ph.D. level) are 10 study point courses. The 8 study points variant of the course (MBV-INF9410A) will not be given after 2013.
The course consists of five weeks of lectures, exercises, obligatory assignments, and a take-home exam (one week). Obligatory assignments must be completed and approved before the exam and in the same semester. An additional, limited, oral examination may be arranged in cases where this is necessary for the student evaluation. The course is open also for non-UiO students. It is only necessary to be physically present in Oslo for certain parts of the course.
Here is an overview of the course. The contents of the different lectures and exercises will be available shortly.
Week 46 | Week 47 | Week 48 | Week 49 | Week 50 | |
---|---|---|---|---|---|
Mon | Lectures/
exercises |
Lectures/
exercises |
Obligatory
home assignment |
Lectures/
exercises |
Exam start
(home assignment) |
Tue | Lectures/
exercises |
Lectures/
exercises |
Home assignment | Lectures/
exercises |
Exam start
(home assignment) |
Wed | Lectures/
exercises |
Lectures/
exercises |
Home assignment | Lectures/
exercises |
Exam start
(home assignment) |
Thu | Lectures/
exercises |
Lectures/
exercises |
Home assignment | Lectures/
exercises |
Exam start
(home assignment) |
Fri | Lectures/
exercises |
Lectures/
exercises |
Hand in
home assignment |
Lectures/
exercises |
Exam end
(home assignment) |
Time and place
Room 1250, 1st floor of Biology Buiding (Kristine Bonnevies Hus).
Detailed program
The program is still under development and may be updated
Week | Monday | Tuesday | Wednesday | Thursday | Friday |
---|---|---|---|---|---|
Nov 14 | Nov 15 | Nov 16 | Nov 17 | Nov 18 | |
46 | 09:15 - 11:00:
Course introduction (lecture) 11:15 - 13:00: Biological databases, Unix (lectures/exercises) 14:15 - 16:00: Basic Unix (excercises) |
09:15 - 11:00:
Ensembl genome browser and Jalview (lectures/demo) 11:15 - 13:00: Working with sequences and databases (lectures/exercises) 14:15 - 16:00: Applied sequence bioinformatics |
09:15 - 11:00:
More Unix and UCSC genome browser (lectures/exercises) 11:15 - 13:00: Galaxy / Life Portal (lectures/exercises) 14:15 - 16:00: |
09:15 - 16:00:
Python workshop (lectures / exercises) |
09:15 - 16:00:
Python workshop (lectures / exercises) |
47 | |||||
48 | |||||
49 | |||||
50 |
Contacts
Jon Bråte (Course coordinator) - e-mail: jon.brate@ibv.uio.no, phone: +47 922 44 582
Torill Rørtveit (Course administrator, registration) - e-mail: torill.rortveit@ibv.uio.no