Difference between revisions of "INF-BIOX120 H13 course material"
(→Quality control) |
|||
| Line 9: | Line 9: | ||
== Quality control == | == Quality control == | ||
| − | [https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly/blob/master/practicals/ | + | [https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly/blob/master/practicals/00_Read_QC.md Read QC practical] (webpage) |
== miRNA == | == miRNA == | ||
Latest revision as of 13:51, 7 October 2013
Contents
Introduction
Introduction to High-throughput sequencing technologies and applications (pdf)
File formats
HTS_Course_file_formats (pdf)
HTS_Course_file_formats_exercises (pdf)
Quality control
Read QC practical (webpage)
miRNA
microRNA_theory (pdf)
microRNA_analysis (pdf)
Baboon_miRNA (link to article)
edgeR (pdf)
miRNA_analysis_infbio_practicals (pdf)
RNAseq
RNAseq_introduction180913 (pdf)
Introduction Differential Expression (pdf)
INF-BIOx120 RNASeq Analysis (pdf)
commands.txt
Variant calling
variantCallingCourse_sept2013_Part1(pdf)
variantCallingCourse_sept2013_Part2 (pdf)
De novo assembly
See this github repo: https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly
Statistical genomics
StatisticalGenomics_part_1 (pdf)
StatisticalGenomics_part_3 (pdf)
StatisticalGenomics_part_4 (pdf)
ChoiceOfWaysOfInteractingWithBioinformatics (pdf)
