Difference between revisions of "INF-BIOX121 H14 RStudio IPython"
From projects/clsi
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*Linux or Mac | *Linux or Mac | ||
**open a terminal and write | **open a terminal and write | ||
− | < | + | <pre>ssh -L 20000:localhost:8787 username@bioinfcourse.hpc.uio.no</pre> |
**the port number on the left (20000) is an example. Choose any large port number > 20000 | **the port number on the left (20000) is an example. Choose any large port number > 20000 | ||
**the one on the right should *always* be 8787 | **the one on the right should *always* be 8787 | ||
Line 29: | Line 29: | ||
*Windows | *Windows | ||
− | ** | + | **see [http://howto.ccs.neu.edu/howto/windows/ssh-port-tunneling-with-putty/ http://howto.ccs.neu.edu/howto/windows/ssh-port-tunneling-with-putty/]on how to set up your tunnel |
− | ** | + | **<span style="font-size: 12px;">source port: 20000 (choose any large port number > 20000)</span> |
− | ** | + | **destination: localhost:8787 (dont change this number) |
*All | *All | ||
**on the classroom PC, open a webbrowser (e.g. firefox) | **on the classroom PC, open a webbrowser (e.g. firefox) | ||
− | ** | + | **point the browser to localhost:20000 to access the RStudio server login screen |
+ | **you can then type your username and password to login and access your R environment from your web browser | ||
<div><br/></div> | <div><br/></div> |
Revision as of 10:51, 8 October 2014
Using the IPython Notebook
- login as usual, with X forwarding on tjhe course server
- start a so-called virtual Python environment (virtualenv):
source /opt/ipytest/bin/activate
- this changes your promt, don't worry.
- move (cd) to a folder if needed, for example where the data is you want to analyse
- launch iPython notebook
ipython notebook
- check where it says "The IPython Notebook is running at: http://127.0.0.1:8888/" and note the last four digits ('8888' in this case)
- Mac/Linux
- start another terminal session and you create a so-called SSH tunnel, make sure to use the same four digits in the middle
ssh -L 30000:127.0.0.1:8888 username@bioinfcourse.hpc.uio.no
- Windows
- see http://howto.ccs.neu.edu/howto/windows/ssh-port-tunneling-with-putty/ on how to set up your tunnel
- source port: 30000
- destination: 127.0.0.1:8888 (use those same four digits as you noted down above)
- All
- on the classroom PC, open a webbrowser (e.g. firefox)
- point the browser to 127.0.0.1:30000
Using Rstudio
- Linux or Mac
- open a terminal and write
ssh -L 20000:localhost:8787 username@bioinfcourse.hpc.uio.no
- the port number on the left (20000) is an example. Choose any large port number > 20000
- the one on the right should *always* be 8787
- Once you type the above command, login with your SSH username and password, like you normally do.
- Windows
- see http://howto.ccs.neu.edu/howto/windows/ssh-port-tunneling-with-putty/on how to set up your tunnel
- source port: 20000 (choose any large port number > 20000)
- destination: localhost:8787 (dont change this number)
- All
- on the classroom PC, open a webbrowser (e.g. firefox)
- point the browser to localhost:20000 to access the RStudio server login screen
- you can then type your username and password to login and access your R environment from your web browser