Difference between revisions of "INF-BIOX121 H14 course material"

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See [https://github.com/lexnederbragt/INF-BIOx121_fall2014_de_novo_assembly this github repository].
 
See [https://github.com/lexnederbragt/INF-BIOx121_fall2014_de_novo_assembly this github repository].
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== How to become an efficient bioinformatician ==
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Lex Nederbragt: [https://wiki.uio.no/projects/clsi/images/7/75/141014_Thoughts_on_reproducibility_INF_BIOx121.pptx.pdf Thoughts on reproducibility]
  
 
== RNAseq ==
 
== RNAseq ==

Revision as of 11:40, 14 October 2014

Introduction

HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf

File formats

HTS_2014_Day01_File_formats.pdf

HTS_2014_Day01_File_formats-exercises.pdf

Quality control

HTS_2014_read_qc.pdf

Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/

Some more information on 'duplication levels': [1]

miRNA

HTS_2014__microRNA_theory_IB_14.pdf

HTS_2014_Intro_Galaxy_Lifeportal.pdf

HTS_2014_miRNA_analysis_Lifeportal_14_final.pdf

De novo assembly

See this github repository.

How to become an efficient bioinformatician

Lex Nederbragt: Thoughts on reproducibility

RNAseq

Variant calling

ChIP-seq

Statistical genomics