Difference between revisions of "INF-BIOX121 H14 course material"
From projects/clsi
| Line 46: | Line 46: | ||
Jon Lærdahl: [[Media:DatabasesOnTheWeb-A1.pdf|Bioinformatics resources on the web]] | Jon Lærdahl: [[Media:DatabasesOnTheWeb-A1.pdf|Bioinformatics resources on the web]] | ||
| + | |||
| + | Martin Malmstrøm: [[Media:HTS_2014_Martin_Malsmtroem.pdf|If I can, YOU can!�� - From seal cuddling to hardcore bioinformatics]] | ||
Rolf Skotheim: [[Media:HTS 2014 Rolf Skotheim.pdf|Selected bioinformatics approaches to identify RNA changes in cancer]] | Rolf Skotheim: [[Media:HTS 2014 Rolf Skotheim.pdf|Selected bioinformatics approaches to identify RNA changes in cancer]] | ||
Revision as of 11:06, 23 October 2014
Contents
Introduction
HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf
File formats
Quality control
Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
Some more information on 'duplication levels': https://www.biostars.org/p/107402/
miRNA
De novo assembly
Also, have a look at this presentation on different aspects of assembly we didn't manage to go through.
How to become an efficient bioinformatician
Lex Nederbragt: Thoughts on reproducibility
Karin Lagesen: Working with data
Jon Lærdahl: Oslo Bioinformatics Core Facility & Elixir Noway
Jon Lærdahl: Bioinformatics resources on the web
Martin Malmstrøm: If I can, YOU can!�� - From seal cuddling to hardcore bioinformatics
Rolf Skotheim: Selected bioinformatics approaches to identify RNA changes in cancer
