Difference between revisions of "INF-BIOX121 H14 course material"
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== Statistical genomics == | == Statistical genomics == | ||
| − | [[Media: | + | [[Media:HTS 2014 Statistical genomics part 1.pdf|Statistical genomics part 1]] |
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| + | [[Media:HTS 2014 Statistical genomics part 2.pdf|Statistical genomics part 2]] | ||
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| + | [[Media:HTS 2014 Data upload and track types.pdf|Data upload and track types]] | ||
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| + | [[Media:HTS 2014 Elixir.no and NeLS.pdf|Elixir.no and NeLS]] | ||
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| + | [[Media:HTS 2014 MS data.txt|MS data]] | ||
Revision as of 12:41, 29 October 2014
Contents
Introduction
HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf
File formats
Quality control
Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
Some more information on 'duplication levels': https://www.biostars.org/p/107402/
miRNA
De novo assembly
Also, have a look at this presentation on different aspects of assembly we didn't manage to go through.
How to become an efficient bioinformatician
Lex Nederbragt: Thoughts on reproducibility
Karin Lagesen: Working with data
Jon Lærdahl: Oslo Bioinformatics Core Facility & Elixir Noway
Jon Lærdahl: Bioinformatics resources on the web
Martin Malmstrøm: If I can, YOU can! - From seal cuddling to hardcore bioinformatics
Rolf Skotheim: Selected bioinformatics approaches to identify RNA changes in cancer
