Difference between revisions of "INF-BIOX121 H14 course material"

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[https://wiki.uio.no/projects/clsi/images/d/de/HTS_2014_read_qc.pdf HTS_2014_read_qc.pdf]
 
[https://wiki.uio.no/projects/clsi/images/d/de/HTS_2014_read_qc.pdf HTS_2014_read_qc.pdf]
  
<span style="font-size: 12px;">Fastqc manual:&nbsp;</span>[http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/ [1]]
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Fastqc manual: [http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/ http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/]
  
<span style="font-size: 12px;">Some more information on 'duplication levels':&nbsp;</span>[https://www.biostars.org/p/107402/ [2]]
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Some more information on 'duplication levels':&nbsp;[https://www.biostars.org/p/107402/ [1]]
  
 
== Read QC practical ==
 
== Read QC practical ==

Revision as of 11:44, 7 October 2014

Introduction

HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf

File formats

HTS_2014_Day01_File_formats.pdf

HTS_2014_Day01_File_formats-exercises.pdf

Quality control

HTS_2014_read_qc.pdf

Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/

Some more information on 'duplication levels': [1]

Read QC practical

miRNA

De novo assembly

RNAseq

Variant calling

ChIP-seq

Statistical genomics