Difference between revisions of "INF-BIOX121 H14 course material"

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[https://wiki.uio.no/projects/clsi/images/3/32/HTS_2014_Intro_Galaxy_Lifeportal.pdf HTS_2014_Intro_Galaxy_Lifeportal.pdf]
 
[https://wiki.uio.no/projects/clsi/images/3/32/HTS_2014_Intro_Galaxy_Lifeportal.pdf HTS_2014_Intro_Galaxy_Lifeportal.pdf]
  
[https://wiki.uio.no/projects/clsi/images/2/2f/HTS_2014_miRNA_analysis_Lifeportal_14_final.pdf HTS_2014__miRNA_analysis_Lifeportal_14_final.pdf]
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[https://wiki.uio.no/projects/clsi/images/2/2f/HTS_2014_miRNA_analysis_Lifeportal_14_final.pdf HTS_2014_miRNA_analysis_Lifeportal_14_final.pdf]
  
 
== De novo assembly ==
 
== De novo assembly ==

Revision as of 11:02, 7 October 2014

Introduction

HTS_2014_SequencingTech&Applic_Meza-Zepeda.pdf

File formats

HTS_2014_Day01_File_formats.pdf

HTS_2014_Day01_File_formats-exercises.pdf

Quality control

HTS_2014_read_qc.pdf

Fastqc manual: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/

Some more information on 'duplication levels': [1]

miRNA

HTS_2014__microRNA_theory_IB_14.pdf

HTS_2014_Intro_Galaxy_Lifeportal.pdf

HTS_2014_miRNA_analysis_Lifeportal_14_final.pdf

De novo assembly

RNAseq

Variant calling

ChIP-seq

Statistical genomics