Difference between revisions of "INF-BIOX121 H15 curriculum"

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===== Sequencing =====
 
===== Sequencing =====
[https://wiki.uio.no/projects/clsi/images/0/0d/Buermans2014.pdf|'''Buermans ''et al.'',''' Next generation sequencing technology: Advances and applications ''Biochimica et Biophysica Acta'' 2014]
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[https://wiki.uio.no/projects/clsi/images/0/0d/Buermans2014.pdf |'''Buermans ''et al.'',''' Next generation sequencing technology: Advances and applications ''Biochimica et Biophysica Acta'' 2014]
  
 
===== Assembly =====
 
===== Assembly =====

Revision as of 11:48, 26 August 2015

Work in progress, expected to be complete no later than 1st of September, 2015.

Curriculum for INF-BIO5/9121

The fields of bioinformatics and genomics are in rapid development. Hence, the curriculum for this course is not a book, but a set of articles. We have put together two sets of articles for this course. The first comprises the core curriculum, these are articles from which questions for the exam might be pulled. The second set is a list of articles that will give more in-depth information. These articles will not be used for the exam, but still represent highly useful and relevant knowledge that we highly recommend reading.

Core curriculum

Sequencing

|Buermans et al., Next generation sequencing technology: Advances and applications Biochimica et Biophysica Acta 2014

Assembly

Assembly algorithms for next-generation sequencing data

Miller JR, Koren S, Sutton G.

Genomics. 2010 Jun;95(6):315-27

Coelacanth genome: http://www.nature.com/nature/journal/v496/n7445/full/nature12027.html

Cichlid genomes: http://www.nature.com/nature/journal/v513/n7518/full/nature13726.html

Recommended reading

Sequencing

Suggested Reading for Sequencing in general

Metzker http://dx.doi.org/10.1038/nrg2626 (står nevnt på 2014 wiki)

http://www.genomebiology.com/2013/14/5/R51

website: NGS Field Guide http://www.molecularecologist.com/next-gen-fieldguide-2014/


Assembly

http://www.ncbi.nlm.nih.gov/pubmed/25553065

http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1935.html

Og selvfølgelig Star et al 2011 :-) http://www.nature.com/nature/journal/v477/n7363/full/nature10342.html