Difference between revisions of "MBV-INFX410 2016"

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== [https://wiki.uio.no/projects/clsi/index.php/MBV-INFX410 Bioinformatics for Molecular Biology] - 2016 ==
 
== [https://wiki.uio.no/projects/clsi/index.php/MBV-INFX410 Bioinformatics for Molecular Biology] - 2016 ==
'''''UNDER CONSTRUCTION!!!!!'''''
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'''''{{Font color||yellow|UNDER CONSTRUCTION!!!!!}}'''''  
  
 
'''''All students must be present at the start of the course, at 09:15, on November 14. Missing students will not be allowed to follow the course or to take the exam. If you for some reason are not able to attend, please contact Jon Bråte (See [https://wiki.uio.no/projects/clsi/index.php/MBV-INFX410_2016#Contacts contact details] below).'''''
 
'''''All students must be present at the start of the course, at 09:15, on November 14. Missing students will not be allowed to follow the course or to take the exam. If you for some reason are not able to attend, please contact Jon Bråte (See [https://wiki.uio.no/projects/clsi/index.php/MBV-INFX410_2016#Contacts contact details] below).'''''
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Course introduction (lecture)
 
Course introduction (lecture)
 
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Basic Unix (excercises)
 
Basic Unix (excercises)
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Ensembl genome browser  
 
Ensembl genome browser  
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Applied sequence bioinformatics
 
Applied sequence bioinformatics
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More Unix and  
 
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14:15 - 16:00:
 
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Python workshop
 
Python workshop
  
 
(lectures / exercises)
 
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Python workshop
 
Python workshop
  

Revision as of 08:48, 4 October 2016

Bioinformatics for Molecular Biology - 2016

Deleted...

All students must be present at the start of the course, at 09:15, on November 14. Missing students will not be allowed to follow the course or to take the exam. If you for some reason are not able to attend, please contact Jon Bråte (See contact details below).

This is the wiki for the courses MBV-INF4410 and MBV-INF9410 offered by the Department of Biosciences and Department of Informatics at the University of Oslo (UiO). Both MBV-INF4410 (M.Sc. level) and MBV-INF9410 (Ph.D. level) are 10 study point courses. The 8 study points variant of the course (MBV-INF9410A) will not be given after 2013.

The course consists of five weeks of lectures, exercises, obligatory assignments, and a take-home exam (one week). Obligatory assignments must be completed and approved before the exam and in the same semester. An additional, limited, oral examination may be arranged in cases where this is necessary for the student evaluation. The course is open also for non-UiO students. It is only necessary to be physically present in Oslo for certain parts of the course.

Here is an overview of the course. The contents of the different lectures and exercises will be available shortly.

Week 46 Week 47 Week 48 Week 49 Week 50
Mon Lectures/

exercises

Lectures/

exercises

Obligatory

home assignment

Lectures/

exercises

Exam start

(home assignment)

Tue Lectures/

exercises

Lectures/

exercises

Home assignment Lectures/

exercises

Exam start

(home assignment)

Wed Lectures/

exercises

Lectures/

exercises

Home assignment Lectures/

exercises

Exam start

(home assignment)

Thu Lectures/

exercises

Lectures/

exercises

Home assignment Lectures/

exercises

Exam start

(home assignment)

Fri Lectures/

exercises

Lectures/

exercises

Hand in

home assignment

Lectures/

exercises

Exam end

(home assignment)

Time and place

Room 1250, 1st floor of Biology Buiding (Kristine Bonnevies Hus).

Detailed program

The program is still under development and may be updated

Week Monday Tuesday Wednesday Thursday Friday
46 09:15 - 11:00:

Course introduction (lecture) 11:15 - 13:00:

Biological databases,

Unix (lectures/exercises)

14:15 - 16:00:

Basic Unix (excercises)

09:15 - 11:00:

Ensembl genome browser

and Jalview (lectures/demo)

11:15 - 13:00:

Working with sequences

and databases (lectures/exercises)

14:15 - 16:00:

Applied sequence bioinformatics

09:15 - 11:00:

More Unix and

UCSC genome browser (lectures/exercises)

11:15 - 13:00:

Galaxy / Life Portal (lectures/exercises)

14:15 - 16:00:

09:15 - 16:00:

Python workshop

(lectures / exercises)

09:15 - 16:00:

Python workshop

(lectures / exercises)

47
48
49
50

Contacts

Jon Bråte (Course coordinator) - e-mail: jon.brate@ibv.uio.no, phone: +47 922 44 582

Torill Rørtveit (Course administrator, registration) - e-mail: torill.rortveit@ibv.uio.no