Difference between revisions of "Main Page"

<div>------------------------------------------------------------------------</div><div>10:00 - 10:15 &nbsp;: &nbsp;[[[[media:Intro.pdf]]|Welcome & introduction to Elixir]]&nbsp;<span style="color: rgb(43, 43, 43); font-family: Arial, sans-serif; font-size: 13px; line-height: 20px;">&#x5B;&#x5B;file:Intro.pdf&#x5D;&#x5D;</span>'''<code style="font-family: monospace, Courier; background-color: rgb(249, 249, 249);">&nbsp;</code>'''(Eivind Hovig, OUS-HF - Radium/UiO)&nbsp;</div><div>10:15 - 10:30 &nbsp;: &nbsp;Overview of Elixir.no infrastructure and resources (Kjell Petersen, UiB)</div><div>10:30 - 11:00 &nbsp;: &nbsp;Sensitive data (Gard O. Thomassen, USIT)</div><div>11:00 - 12:00 &nbsp;: &nbsp;Tjenester for Sensitive Data (TSD) - Architecture and services (Gard O. Thomassen, USIT)</div><div><br/></div><div>12:00 - 13:00 &nbsp;: &nbsp;Lunch</div><div><br/></div><div>13:00 - 14:10 &nbsp;: &nbsp;TSD - Login [Hands-on] (Abdulrahman Azab, UiO)</div><div>14:10 - 14:50 &nbsp;: &nbsp;TSD - Data transfer [Hands-on] (Abdulrahman Azab, UiO)</div><div><br/></div><div>14:50 - 15:00 &nbsp;: &nbsp;Coffee break</div><div><br/></div><div>15:00 - 16:00 &nbsp;: &nbsp;TSD - Running software on the command line [Hands-on] (Abdulrahman Azab, UiO)</div><div>16:00 - 17:00 &nbsp;: &nbsp;NCGC somatic variant calling pipeline [Presentation & demo] (Daniel Vodak / Sigve Nakken, OUS-HF - Radium)</div><div><br/></div><div>19:00&nbsp;: &nbsp;Dinner</div><div>------------------------------------------------------------------------</div><div><br/></div><div>Thursday 19th</div><div>------------------------------------------------------------------------</div><div>09:00 - 09:30 &nbsp;: &nbsp;Introduction to Galaxy (Sveinung Gundersen / Geir Kjetil Sandve, UiO)</div><div>09:30 - 09:45 &nbsp;: &nbsp;NSC germline variant calling pipeline (yet to be decided)</div><div>09:45 - 10:45 &nbsp;: &nbsp;Galaxy in TSD [Hands-on] with running of germline pipeline [Demo] (Abdulrahman Azab, UiO / Ghislain Fornous, OUS-HF - Radium)</div><div><br/></div><div>10:45 - 11:00 &nbsp;: &nbsp;Coffee Break</div><div><br/></div><div>11:00 - 11:20 &nbsp;: &nbsp;Overview of National e-Infrastructure for Life Science (NeLS) (Kidane Tekle, UiB)</div><div>11:20 - 12:00 &nbsp;: &nbsp;Handling data and storage in NeLS [Hands-on] (Sveinung Gundersen, UiO)</div><div><br/></div><div>12:00 - 13:00 &nbsp;: &nbsp;Lunch</div><div><br/></div><div>13:00 - 13:50 &nbsp;: &nbsp;RNA-seq pipelines in NeLS [Hands-on] (Kjell Petersen, UiB)</div><div>13:50 - 14:20 &nbsp;: &nbsp;MetaPipe - metagenomics pipeline in NeLS [Demo] (Alexander Raknes, UiT)</div><div><br/></div><div>14:20 - 14:30 &nbsp;: &nbsp;Coffee Break</div><div><br/></div><div>14:30 - 15:00 &nbsp;: &nbsp;Statistical genomics with the HyperBrowser [Demo] (Sveinung Gundersen, UiO)</div><div>15:00 - 16:00 &nbsp;: &nbsp;Discussion / feedback session (Eivind Hovig, OUS-HF - Radium/UiO)</div><div>------------------------------------------------------------------------</div><div><br/></div><div><br/></div><div><div>Monday 23rd</div><div>-------------------------------------------------------------------------</div><div>10:00 - 10:15 &nbsp;: &nbsp;Welcome & introduction (Eivind Hovig)</div><div>10:15 - 10:45&nbsp;: Sequencing lab workflow (Leonardo Meza-Zepeda)</div><div>10:45 - 11:00 &nbsp;: General data flow (Ghislain Fournous/Daniel vodák)</div><div>11:00 - 11:30 &nbsp;: &nbsp;Tjenester for Sensitive Data (TSD) - Overview and usage (Abdulrahman Azab)</div><div>11:30 - 12:15&nbsp;: TSD [Hands-on] (Abdulrahman Azab]</div><div><br/></div><div>12:15 - 13:00 &nbsp;: &nbsp;Lunch</div><div><br/></div><div>13:00 - 14:00 &nbsp;: &nbsp;NCGC pipeline/ICGC/Annotation pipeline (Daniel Vodák, Ghislain Fournous, Sigve Nakken)</div><div>14:00 - 14:30&nbsp;: Bash, Ruby pipeline (Ghislain Fournous, Daniel Vodák)</div><div>14:30 - 14:40&nbsp;: Coffee break</div><div>14:40 - 15:30 &nbsp;: NCGC pipeline [Hands-on] (Daniel Vodák, Ghislain Fournous, Sigve Nakken)</div><div>15:30 - 16:30&nbsp;: Downstream analysis options [Discussion] (Everybody, Sigve Nakken, Eivind Hovig)</div></div>