Difference between revisions of "Rat Hippocampus Atlas"
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== About == | == About == | ||
| − | + | <span style="font-family:georgia,serif;">The rat hippocampus atlas is an interactive resource providing detailed descriptions of 18 hippocampal structures, criteria for delineating 63 boundaries between these structures, a histological image repository with delineated boundaries, and bidirectional links between descriptions (Index of structures) and corresponding section images (Image viewer). <span style="font-family:georgia,serif;">The system is intended for researchers working in the field, as well as students interested in this brain region.</span> | |
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== Access image repository == | == Access image repository == | ||
| − | <span style="font-family:georgia,serif;">The image repository consists of ~100 coronal images stained for NeuN, calbindin, and parvalbumin | + | <span style="font-family:georgia,serif;">The image repository consists of ~100 coronal images stained for NeuN, calbindin, and parvalbumin displayed in a triple image viewer that allows interactive zooming and panning of each viewer panel (with a possibility to synchronize the three panels). Annotations can be toggled on / of, and pre-set high-magnification positions for annotated regions are available. </span> |
<span style="font-family:georgia,serif;">'''Re-use of data from this repository is allowed provided that reference is given to the following publication:''' </span><span style="font-family:georgia,serif;">Kjonigsen LJ, Leergaard TB, Witter MP, Bjaalie JG., 2011. Digital atlas of anatomical subdivisions and boundaries of the rat hippocampal region. Frontiers in Neuroinformatics, 2011; 5:2. doi: 10.3389/fninf.2011.00002</span> | <span style="font-family:georgia,serif;">'''Re-use of data from this repository is allowed provided that reference is given to the following publication:''' </span><span style="font-family:georgia,serif;">Kjonigsen LJ, Leergaard TB, Witter MP, Bjaalie JG., 2011. Digital atlas of anatomical subdivisions and boundaries of the rat hippocampal region. Frontiers in Neuroinformatics, 2011; 5:2. doi: 10.3389/fninf.2011.00002</span> | ||
| + | {| class="wikitable" | ||
| + | ![http://cmbn-navigator.uio.no/rat_hippocampus_atlas/ Rat Hippocampus Atlas application 2.0] | ||
| + | |} | ||
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| + | == <span style="font-family:georgia,serif;">Contributing laboratories</span> == | ||
| + | <span style="font-family:georgia,serif;">'''Kavli Institute for Systems Neuroscience & Centre for the Biology of Memory''', </span><span style="font-family:georgia,serif;">Medical-Technical Research Centre, Norwegian University of Science and Technology, N - 7489 Trondheim, Norway </span> (<span style="font-family:georgia,serif;">http://www.ntnu.no/cbm/). '''People:''' Menno P. Witter</span> | ||
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| + | '''Neural Systems Laboratory''' (<span style="font-family:georgia,serif;">[http://www.nesys.uio.no/ http://www.nesys.uio.no]</span>), Centre for Molecular Biology and Neuroscience & Institute of Basic Medical Sciences, Department of Anatomy, University of Oslo, P.O. Box 1105 Blindern, N - 0317 Oslo, Norway. '''People:''' Lisa J. Kjønigsen, Dmitri Darine, Jan Olav Kjøde, Ivar A. Moene, Trygve B. Leergaard, Jan G. Bjaalie | ||
== <span style="font-family:georgia,serif;">External links</span> == | == <span style="font-family:georgia,serif;">External links</span> == | ||
| − | + | <span style="font-family:georgia,serif;">[http://www.temporal-lobe.com The Hippocampal Connectome Project]</span> | |
| − | <span style="font-family:georgia,serif;"> | ||
== <span style="font-family:georgia,serif;">History</span> == | == <span style="font-family:georgia,serif;">History</span> == | ||
| + | * <span style="font-family:georgia,serif;">2015-10 Transfer to new viewer platform. Release of version 2.0 running on Navigator 3.0.6</span> | ||
* <span style="font-family:georgia,serif;">2011-03 Speed optimization. Release of version 1.2</span> | * <span style="font-family:georgia,serif;">2011-03 Speed optimization. Release of version 1.2</span> | ||
* <span style="font-family:georgia,serif;">2011-01 Release of version 1.1 in conjunction with publication </span> | * <span style="font-family:georgia,serif;">2011-01 Release of version 1.1 in conjunction with publication </span> | ||
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* <span style="font-family:georgia,serif;">2009-09 Poster / demonstration, 2nd INCF Congress of Neuroinformatics, Plzen, Czech Republic</span> | * <span style="font-family:georgia,serif;">2009-09 Poster / demonstration, 2nd INCF Congress of Neuroinformatics, Plzen, Czech Republic</span> | ||
| − | == | + | == Funded by: == |
| − | + | * The Human Brain Project through the European Union Seventh Framework Program (FP7/2007-2013) under grant agreement no. 604102 (HBP) | |
| − | + | * The Research Council of Norway (INCF National NodeI, project 214842) | |
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== Contact == | == Contact == | ||
| − | j.g.bjaalie@medisin.uio.no<span style="font-family:georgia,serif;"></span>[[Category:Atlas]] | + | j.g.bjaalie@medisin.uio.no<span style="font-family:georgia,serif;"></span> |
| + | [[Category:Atlas]] | ||
Latest revision as of 12:42, 29 January 2017
Contents
About
The rat hippocampus atlas is an interactive resource providing detailed descriptions of 18 hippocampal structures, criteria for delineating 63 boundaries between these structures, a histological image repository with delineated boundaries, and bidirectional links between descriptions (Index of structures) and corresponding section images (Image viewer). The system is intended for researchers working in the field, as well as students interested in this brain region.
Access image repository
The image repository consists of ~100 coronal images stained for NeuN, calbindin, and parvalbumin displayed in a triple image viewer that allows interactive zooming and panning of each viewer panel (with a possibility to synchronize the three panels). Annotations can be toggled on / of, and pre-set high-magnification positions for annotated regions are available.
Re-use of data from this repository is allowed provided that reference is given to the following publication: Kjonigsen LJ, Leergaard TB, Witter MP, Bjaalie JG., 2011. Digital atlas of anatomical subdivisions and boundaries of the rat hippocampal region. Frontiers in Neuroinformatics, 2011; 5:2. doi: 10.3389/fninf.2011.00002
| Rat Hippocampus Atlas application 2.0 |
|---|
Contributing laboratories
Kavli Institute for Systems Neuroscience & Centre for the Biology of Memory, Medical-Technical Research Centre, Norwegian University of Science and Technology, N - 7489 Trondheim, Norway (http://www.ntnu.no/cbm/). People: Menno P. Witter
Neural Systems Laboratory (http://www.nesys.uio.no), Centre for Molecular Biology and Neuroscience & Institute of Basic Medical Sciences, Department of Anatomy, University of Oslo, P.O. Box 1105 Blindern, N - 0317 Oslo, Norway. People: Lisa J. Kjønigsen, Dmitri Darine, Jan Olav Kjøde, Ivar A. Moene, Trygve B. Leergaard, Jan G. Bjaalie
External links
The Hippocampal Connectome Project
History
- 2015-10 Transfer to new viewer platform. Release of version 2.0 running on Navigator 3.0.6
- 2011-03 Speed optimization. Release of version 1.2
- 2011-01 Release of version 1.1 in conjunction with publication
- 2010-06 Poster, 7th Forum for European Neuroscience 2010, Amsterdam, The Netherlands
- 2009-11 Poster / demonstration, Society of Neuroscience conference in Chicago, USA
- 2009-09 Poster / demonstration, 2nd INCF Congress of Neuroinformatics, Plzen, Czech Republic
Funded by:
- The Human Brain Project through the European Union Seventh Framework Program (FP7/2007-2013) under grant agreement no. 604102 (HBP)
- The Research Council of Norway (INCF National NodeI, project 214842)
Contact
j.g.bjaalie@medisin.uio.no
