Difference between revisions of "Useful websites with Unix commands"

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Here are some useful website with Unix commands<br>
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Here are some useful website with Unix commands
  
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<br>
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Please [[Tips_for_adding_a_page|add (or suggest)]] your favourite website!
  
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== The basics ==
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== The basics ==
  
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An A-Z Index of the Bash command line for Unix. All the commands with a little extra information.<br>
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An A-Z Index of the Bash command line for Unix. All the commands with a little extra information.
  
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[http://www.ss64.com/bash/ http://www.ss64.com/bash/]<br>
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[http://www.ss64.com/bash/ http://www.ss64.com/bash/]
  
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<br>
 
  
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Unix/Linux Command Cheat Sheet (print out and hang next to your screen) <br>[http://fosswire.com/post/2007/08/unixlinux-command-cheat-sheet/ http://fosswire.com/post/2007/08/unixlinux-command-cheat-sheet/ ]<br>
 
  
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<br>  
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Unix/Linux Command Cheat Sheet (print out and hang next to your screen)<br/>[http://fosswire.com/post/2007/08/unixlinux-command-cheat-sheet/ http://fosswire.com/post/2007/08/unixlinux-command-cheat-sheet/]
  
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Have your shell command explained:<br>[http://explainshell.com/ http://explainshell.com/]<br>
 
  
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<br>
 
  
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A Bioinformatician's UNIX Toolbox<br>[http://lh3lh3.users.sourceforge.net/biounix.shtml http://lh3lh3.users.sourceforge.net/biounix.shtml]  
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Have your shell command explained:<br/>[http://explainshell.com/ http://explainshell.com/]
  
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<br>
 
  
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Bioinformatics one-liners<br>
 
  
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[https://github.com/stephenturner/oneliners https://github.com/stephenturner/oneliners]  
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A Bioinformatician's UNIX Toolbox<br/>[http://lh3lh3.users.sourceforge.net/biounix.shtml http://lh3lh3.users.sourceforge.net/biounix.shtml]
  
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<br>
 
  
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UNIX tips: Learn 10 good UNIX usage habits[http://www.ibm.com/developerworks/aix/library/au-badunixhabits.html#one <br>]
 
  
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[http://www.ibm.com/developerworks/aix/library/au-badunixhabits.html#one http://www.ibm.com/developerworks/aix/library/au-badunixhabits.html#one]<br>
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Bioinformatics one-liners
  
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<br>
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[https://github.com/stephenturner/oneliners https://github.com/stephenturner/oneliners]
  
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A linux command line reference for common operations:<br>[http://www.pixelbeat.org/cmdline.html http://www.pixelbeat.org/cmdline.html ]<br>
 
  
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<br>
 
  
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== Learning unix<br> ==
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UNIX tips: Learn 10 good UNIX usage habits[http://www.ibm.com/developerworks/aix/library/au-badunixhabits.html#one <br />]
  
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Learning unix, material from Software Carpentry:<br>[http://software-carpentry.org/v4/shell/index.html http://software-carpentry.org/v4/shell/index.html]  
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[http://www.ibm.com/developerworks/aix/library/au-badunixhabits.html#one http://www.ibm.com/developerworks/aix/library/au-badunixhabits.html#one]
  
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<br>
 
  
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Other useful material from Software Carpentry:<br>[http://software-carpentry.org/v4/index.html http://software-carpentry.org/v4/index.html]
 
  
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<br>  
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A linux command line reference for common operations:<br/>[http://www.pixelbeat.org/cmdline.html http://www.pixelbeat.org/cmdline.html]
  
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Useful tutorials from 'The Geek Stuff'<br>[http://www.thegeekstuff.com/best-of-the-blog/ http://www.thegeekstuff.com/best-of-the-blog/]
 
  
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<br>
 
  
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== Tricks and more<br>  ==
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== Learning unix ==
  
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Generate your .bashrc PS1 prompt easily with a drag and drop interface<br>[http://bashrcgenerator.com/ http://bashrcgenerator.com/]<br>
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Learning unix, material from Software Carpentry:<br/>[http://software-carpentry.org/v4/shell/index.html http://software-carpentry.org/v4/shell/index.html]
  
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<br>
 
  
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Cheat sheet for one-based vs zero-based coordinate systems<br>[http://www.biostars.org/p/84686/ http://www.biostars.org/p/84686/]
 
  
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<br>  
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Other useful material from Software Carpentry:<br/>[http://software-carpentry.org/v4/index.html http://software-carpentry.org/v4/index.html]
  
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Bash Shortcuts For Maximum Productivity<br>[http://www.skorks.com/2009/09/bash-shortcuts-for-maximum-productivity/ http://www.skorks.com/2009/09/bash-shortcuts-for-maximum-productivity/]
 
  
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<br>
 
  
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Using Make for reproducible scientific analyses<br>[http://www.bendmorris.com/2013/09/using-make-for-reproducible-scientific.html http://www.bendmorris.com/2013/09/using-make-for-reproducible-scientific.html]<br>
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Useful tutorials from 'The Geek Stuff'<br/>[http://www.thegeekstuff.com/best-of-the-blog/ http://www.thegeekstuff.com/best-of-the-blog/]
  
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<br>
 
  
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== More advanced<br> ==
 
  
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Testing exit values in Bash<br>[http://blog.sanctum.geek.nz/testing-exit-values-bash/ http://blog.sanctum.geek.nz/testing-exit-values-bash/]
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== Tricks and more ==
  
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<br>  
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Generate your .bashrc PS1 prompt easily with a drag and drop interface<br/>[http://bashrcgenerator.com/ http://bashrcgenerator.com/]
  
−
Bash process substitution<br>[http://blog.sanctum.geek.nz/bash-process-substitution/ http://blog.sanctum.geek.nz/bash-process-substitution/]<br>
+
 
 +
 
 +
Cheat sheet for one-based vs zero-based coordinate systems<br/>[http://www.biostars.org/p/84686/ http://www.biostars.org/p/84686/]
 +
 
 +
 
 +
 
 +
Bash Shortcuts For Maximum Productivity<br/>[http://www.skorks.com/2009/09/bash-shortcuts-for-maximum-productivity/ http://www.skorks.com/2009/09/bash-shortcuts-for-maximum-productivity/]
 +
 
 +
 
 +
 
 +
Using Make for reproducible scientific analyses<br/>[http://www.bendmorris.com/2013/09/using-make-for-reproducible-scientific.html http://www.bendmorris.com/2013/09/using-make-for-reproducible-scientific.html]
 +
 
 +
 
 +
 
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== More advanced ==
 +
 
 +
Testing exit values in Bash<br/>[http://blog.sanctum.geek.nz/testing-exit-values-bash/ http://blog.sanctum.geek.nz/testing-exit-values-bash/]
 +
 
 +
 
 +
 
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Bash process substitution<br/>[http://blog.sanctum.geek.nz/bash-process-substitution/ http://blog.sanctum.geek.nz/bash-process-substitution/]

Latest revision as of 11:53, 15 October 2014

Here are some useful website with Unix commands

Please add (or suggest) your favourite website!

The basics

An A-Z Index of the Bash command line for Unix. All the commands with a little extra information.

http://www.ss64.com/bash/


Unix/Linux Command Cheat Sheet (print out and hang next to your screen)
http://fosswire.com/post/2007/08/unixlinux-command-cheat-sheet/


Have your shell command explained:
http://explainshell.com/


A Bioinformatician's UNIX Toolbox
http://lh3lh3.users.sourceforge.net/biounix.shtml


Bioinformatics one-liners

https://github.com/stephenturner/oneliners


UNIX tips: Learn 10 good UNIX usage habits

http://www.ibm.com/developerworks/aix/library/au-badunixhabits.html#one


A linux command line reference for common operations:
http://www.pixelbeat.org/cmdline.html


Learning unix

Learning unix, material from Software Carpentry:
http://software-carpentry.org/v4/shell/index.html


Other useful material from Software Carpentry:
http://software-carpentry.org/v4/index.html


Useful tutorials from 'The Geek Stuff'
http://www.thegeekstuff.com/best-of-the-blog/


Tricks and more

Generate your .bashrc PS1 prompt easily with a drag and drop interface
http://bashrcgenerator.com/


Cheat sheet for one-based vs zero-based coordinate systems
http://www.biostars.org/p/84686/


Bash Shortcuts For Maximum Productivity
http://www.skorks.com/2009/09/bash-shortcuts-for-maximum-productivity/


Using Make for reproducible scientific analyses
http://www.bendmorris.com/2013/09/using-make-for-reproducible-scientific.html


More advanced

Testing exit values in Bash
http://blog.sanctum.geek.nz/testing-exit-values-bash/


Bash process substitution
http://blog.sanctum.geek.nz/bash-process-substitution/

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