Difference between revisions of "Old Main Page"
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== Mailing lists == | == Mailing lists == | ||
− | *'''cees-hpc''': to be used for general information related to the area under /projects/cees, the able CPUs and the cod-nodes. [https://sympa.uio.no/bio.uio.no/subscribe/cees-hpc Subscribe here]. | + | *'''cees-hpc''': to be used for general information related to the area under /projects/cees, the able CPUs and the cod-nodes. [https://sympa.uio.no/bio.uio.no/subscribe/cees-hpc Subscribe here]. |
− | *'''cod-nodes''': to be used to inform about the other cod-node users about CPUs and memory usage of the cod nodes, aka 'cod-node hugging' :-) USIT will also send emails to that list when discs on the nodes are full etc. [https://sympa.uio.no/bio.uio.no/subscribe/cod-nodes Subscribe here]. | + | *'''cod-nodes''': to be used to inform about the other cod-node users about CPUs and memory usage of the cod nodes, aka 'cod-node hugging' :-) USIT will also send emails to that list when discs on the nodes are full etc. [https://sympa.uio.no/bio.uio.no/subscribe/cod-nodes Subscribe here]. |
*'''cees-bioinf''': to be used for general information regarding bioinformatics at CEES. [https://sympa.uio.no/bio.uio.no/subscribe/cees-bioinf Subscribe here]. | *'''cees-bioinf''': to be used for general information regarding bioinformatics at CEES. [https://sympa.uio.no/bio.uio.no/subscribe/cees-bioinf Subscribe here]. | ||
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== Use of the CEES hardware and Abel<br> == | == Use of the CEES hardware and Abel<br> == | ||
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[[Abel use|Abel use]] | [[Abel use|Abel use]] | ||
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+ | == Tips, tricks, useful links == | ||
[[Organising your work|Organising your computational work]] | [[Organising your work|Organising your computational work]] | ||
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[[Useful websites with Unix commands|Useful websites with Unix commands]] | [[Useful websites with Unix commands|Useful websites with Unix commands]] | ||
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== How-to's == | == How-to's == |
Revision as of 12:12, 31 October 2013
This wiki is meant as a repository for bioinformatical knowledge at the CEES. It is mainly run by Lex, but others are also very welcome to contribute.
- If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors.
- If you add a page, please list it below! Tips for adding a page.
Contents
Mailing lists
- cees-hpc: to be used for general information related to the area under /projects/cees, the able CPUs and the cod-nodes. Subscribe here.
- cod-nodes: to be used to inform about the other cod-node users about CPUs and memory usage of the cod nodes, aka 'cod-node hugging' :-) USIT will also send emails to that list when discs on the nodes are full etc. Subscribe here.
- cees-bioinf: to be used for general information regarding bioinformatics at CEES. Subscribe here.
Use of the CEES hardware and Abel
Tips, tricks, useful links
Organising your computational work
Useful websites with Unix commands
How-to's
PacBio smrtpipe command-line use
Quickly check the insert size distribution of a new sequencing library
Error correction of Illumina reads using merTrim from the Celera Assembler package
Assembly of Illumina paired end reads using Celera Assembler