Old Main Page
From mn/bio/cees-bioinf
This wiki is meant as a repository for bioinformatical knowledge at the CEES. It is mainly run by Lex, but others are also very welcome to contribute.
- If you want to be able to edit the wiki, let us know and we'll add you to the list of contributors.
- If you add a page, please list it below! Tips for adding a page.
Contents
Mailing lists
- cees-hpc: to be used for general information related to the area under /projects/cees, the able CPUs and the cod-nodes. Subscribe here.
- cod-nodes: to be used to inform about the other cod-node users about CPUs and memory usage of the cod nodes, aka 'cod-node hugging' :-) USIT will also send emails to that list when discs on the nodes are full etc. Subscribe here.
- cees-bioinf: to be used for general information regarding bioinformatics at CEES. Subscribe here.
- Bioinformatics knowledge present at CEES
Use of the CEES hardware and Abel
Tips, tricks, useful links
Organising your computational work
Useful websites with Unix commands
How-to's
PacBio smrtpipe command-line use
Quickly check the insert size distribution of a new sequencing library
Error correction of Illumina reads using merTrim from the Celera Assembler package
Assembly of Illumina paired end reads using Celera Assembler