INF-BIOX120 H13 course material

Introduction

Introduction to High-throughput sequencing technologies and applications (pdf)

File formats

HTS_Course_file_formats (pdf)
HTS_Course_file_formats_exercises (pdf)

Quality control

Read QC practical (webpage)

miRNA

microRNA_theory (pdf)
microRNA_analysis (pdf)
Baboon_miRNA (link to article)
edgeR (pdf)
miRNA_analysis_infbio_practicals (pdf)

RNAseq

RNAseq_introduction180913 (pdf)
Introduction Differential Expression (pdf)
INF-BIOx120 RNASeq Analysis (pdf)
commands.txt

Variant calling

variantCallingCourse_sept2013_Part1(pdf) 

variantCallingCourse_sept2013_Part2 (pdf)

De novo assembly

See this github repo: https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly

Statistical genomics

StatisticalGenomics_part_1 (pdf)
StatisticalGenomics_part_3 (pdf)
StatisticalGenomics_part_4 (pdf)
ChoiceOfWaysOfInteractingWithBioinformatics (pdf)