Difference between revisions of "INF-BIOX120 H13 course material"
From projects/clsi
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| + | == Introduction == | ||
| + | |||
| + | [[Media:https://wiki.uio.no/projects/clsi/images/2/27/SequencingTech%26Applic_INF-BIO_2013.pdf|Introduction to High-throughput sequencing technologies and applications]] (pdf)<br> | ||
| + | |||
== File formats == | == File formats == | ||
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== miRNA == | == miRNA == | ||
| − | [https://wiki.uio.no/projects/clsi/images/0/0f/MicroRNA_theory.pdf microRNA_theory] (pdf)<br> [https://wiki.uio.no/projects/clsi/images/f/fb/MicroRNA_analysis.pdf microRNA_analysis] (pdf)<br> [http://www.biomedcentral.com/1471-2164/13/320 Baboon_miRNA] (link to article)<br> [https://wiki.uio.no/projects/clsi/images/7/74/EdgeR.pdf edgeR] (pdf)<br> [https://wiki.uio.no/projects/clsi/images/9/99/MiRNA_analysis_infbio_practicals.pdf miRNA_analysis_infbio_practicals] (pdf) | + | [https://wiki.uio.no/projects/clsi/images/0/0f/MicroRNA_theory.pdf microRNA_theory] (pdf)<br> [https://wiki.uio.no/projects/clsi/images/f/fb/MicroRNA_analysis.pdf microRNA_analysis] (pdf)<br> [http://www.biomedcentral.com/1471-2164/13/320 Baboon_miRNA] (link to article)<br> [https://wiki.uio.no/projects/clsi/images/7/74/EdgeR.pdf edgeR] (pdf)<br> [https://wiki.uio.no/projects/clsi/images/9/99/MiRNA_analysis_infbio_practicals.pdf miRNA_analysis_infbio_practicals] (pdf) |
== RNAseq == | == RNAseq == | ||
[https://wiki.uio.no/projects/clsi/images/d/da/RNAseq_introduction180913.pdf RNAseq_introduction180913 (pdf)]<br>[https://wiki.uio.no/projects/clsi/images/2/26/Introduction_Differential_Expression.pdf Introduction Differential Expression] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/4/42/INF-BIOx120_RNASeq_Analysis.pdf INF-BIOx120 RNASeq Analysis] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/e/e0/Commands.txt commands.txt] | [https://wiki.uio.no/projects/clsi/images/d/da/RNAseq_introduction180913.pdf RNAseq_introduction180913 (pdf)]<br>[https://wiki.uio.no/projects/clsi/images/2/26/Introduction_Differential_Expression.pdf Introduction Differential Expression] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/4/42/INF-BIOx120_RNASeq_Analysis.pdf INF-BIOx120 RNASeq Analysis] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/e/e0/Commands.txt commands.txt] | ||
Revision as of 20:03, 23 September 2013
Introduction
Introduction to High-throughput sequencing technologies and applications (pdf)
File formats
HTS_Course_file_formats (pdf)
HTS_Course_file_formats_exercises (pdf)
Quality control
Read QC practical (pdf)
miRNA
microRNA_theory (pdf)
microRNA_analysis (pdf)
Baboon_miRNA (link to article)
edgeR (pdf)
miRNA_analysis_infbio_practicals (pdf)
RNAseq
RNAseq_introduction180913 (pdf)
Introduction Differential Expression (pdf)
INF-BIOx120 RNASeq Analysis (pdf)
commands.txt
