Difference between revisions of "INF-BIOX120 H13 course material"
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== Quality control == | == Quality control == | ||
− | [https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly/blob/master/practicals/ | + | [https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly/blob/master/practicals/00_Read_QC.md Read QC practical] (webpage) |
== miRNA == | == miRNA == | ||
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== RNAseq == | == RNAseq == | ||
− | [https://wiki.uio.no/projects/clsi/images/d/da/RNAseq_introduction180913.pdf RNAseq_introduction180913 (pdf) | + | [https://wiki.uio.no/projects/clsi/images/d/da/RNAseq_introduction180913.pdf RNAseq_introduction180913] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/2/26/Introduction_Differential_Expression.pdf Introduction Differential Expression] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/4/42/INF-BIOx120_RNASeq_Analysis.pdf INF-BIOx120 RNASeq Analysis] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/e/e0/Commands.txt commands.txt] |
== Variant calling == | == Variant calling == | ||
− | + | [https://wiki.uio.no/projects/clsi/images/8/80/VariantCallingCourse_sept2013_Part1.pdf variantCallingCourse_sept2013_Part1](pdf) | |
− | == De novo assembly == | + | [https://wiki.uio.no/projects/clsi/images/3/3d/VariantCallingCourse_sept2013_Part2.pdf variantCallingCourse_sept2013_Part2] (pdf) |
+ | |||
+ | == ''De novo'' assembly == | ||
See this github repo: [https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly] | See this github repo: [https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly] | ||
+ | |||
+ | == Statistical genomics == | ||
+ | |||
+ | [https://wiki.uio.no/projects/clsi/images/b/b6/StatisticalGenomics_part_1.pdf StatisticalGenomics_part_1] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/8/87/StatisticalGenomics_part_3.pdf StatisticalGenomics_part_3] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/4/41/StatisticalGenomics_part_4.pdf StatisticalGenomics_part_4] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/3/31/Pres_ChoiceOfWaysOfInteractingWithBioinformatics_v2.pdf ChoiceOfWaysOfInteractingWithBioinformatics] (pdf)<br> |
Latest revision as of 13:51, 7 October 2013
Contents
Introduction
Introduction to High-throughput sequencing technologies and applications (pdf)
File formats
HTS_Course_file_formats (pdf)
HTS_Course_file_formats_exercises (pdf)
Quality control
Read QC practical (webpage)
miRNA
microRNA_theory (pdf)
microRNA_analysis (pdf)
Baboon_miRNA (link to article)
edgeR (pdf)
miRNA_analysis_infbio_practicals (pdf)
RNAseq
RNAseq_introduction180913 (pdf)
Introduction Differential Expression (pdf)
INF-BIOx120 RNASeq Analysis (pdf)
commands.txt
Variant calling
variantCallingCourse_sept2013_Part1(pdf)
variantCallingCourse_sept2013_Part2 (pdf)
De novo assembly
See this github repo: https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly
Statistical genomics
StatisticalGenomics_part_1 (pdf)
StatisticalGenomics_part_3 (pdf)
StatisticalGenomics_part_4 (pdf)
ChoiceOfWaysOfInteractingWithBioinformatics (pdf)