Difference between revisions of "INF-BIOX120 H13 course material"
From projects/clsi
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== Introduction == | == Introduction == | ||
| − | [[Media:SequencingTech%26Applic_INF-BIO_2013.pdf|Introduction to High-throughput sequencing technologies and applications]] (pdf)<br> | + | [[Media:SequencingTech%26Applic_INF-BIO_2013.pdf|Introduction to High-throughput sequencing technologies and applications]] (pdf)<br> |
== File formats == | == File formats == | ||
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== RNAseq == | == RNAseq == | ||
| − | [https://wiki.uio.no/projects/clsi/images/d/da/RNAseq_introduction180913.pdf RNAseq_introduction180913 (pdf)]<br>[https://wiki.uio.no/projects/clsi/images/2/26/Introduction_Differential_Expression.pdf Introduction Differential Expression] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/4/42/INF-BIOx120_RNASeq_Analysis.pdf INF-BIOx120 RNASeq Analysis] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/e/e0/Commands.txt commands.txt] | + | [https://wiki.uio.no/projects/clsi/images/d/da/RNAseq_introduction180913.pdf RNAseq_introduction180913 (pdf)]<br>[https://wiki.uio.no/projects/clsi/images/2/26/Introduction_Differential_Expression.pdf Introduction Differential Expression] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/4/42/INF-BIOx120_RNASeq_Analysis.pdf INF-BIOx120 RNASeq Analysis] (pdf)<br>[https://wiki.uio.no/projects/clsi/images/e/e0/Commands.txt commands.txt] |
| + | |||
| + | == Variant calling == | ||
| + | |||
| + | Forthcoming... | ||
| + | |||
| + | == De novo assembly == | ||
| + | |||
| + | See this github repo: [https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly] | ||
Revision as of 21:27, 23 September 2013
Contents
Introduction
Introduction to High-throughput sequencing technologies and applications (pdf)
File formats
HTS_Course_file_formats (pdf)
HTS_Course_file_formats_exercises (pdf)
Quality control
Read QC practical (pdf)
miRNA
microRNA_theory (pdf)
microRNA_analysis (pdf)
Baboon_miRNA (link to article)
edgeR (pdf)
miRNA_analysis_infbio_practicals (pdf)
RNAseq
RNAseq_introduction180913 (pdf)
Introduction Differential Expression (pdf)
INF-BIOx120 RNASeq Analysis (pdf)
commands.txt
Variant calling
Forthcoming...
De novo assembly
See this github repo: https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly
