Difference between revisions of "INF-BIOX120 H13 course material"
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== Variant calling == | == Variant calling == | ||
| − | + | [https://wiki.uio.no/projects/clsi/images/8/80/VariantCallingCourse_sept2013_Part1.pdf variantCallingCourse_sept2013_Part1](pdf) | |
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| + | [https://wiki.uio.no/projects/clsi/images/3/3d/VariantCallingCourse_sept2013_Part2.pdf variantCallingCourse_sept2013_Part2] (pdf) | ||
== De novo assembly == | == De novo assembly == | ||
See this github repo: [https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly] | See this github repo: [https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly] | ||
Revision as of 12:48, 24 September 2013
Contents
Introduction
Introduction to High-throughput sequencing technologies and applications (pdf)
File formats
HTS_Course_file_formats (pdf)
HTS_Course_file_formats_exercises (pdf)
Quality control
Read QC practical (pdf)
miRNA
microRNA_theory (pdf)
microRNA_analysis (pdf)
Baboon_miRNA (link to article)
edgeR (pdf)
miRNA_analysis_infbio_practicals (pdf)
RNAseq
RNAseq_introduction180913 (pdf)
Introduction Differential Expression (pdf)
INF-BIOx120 RNASeq Analysis (pdf)
commands.txt
Variant calling
variantCallingCourse_sept2013_Part1(pdf)
variantCallingCourse_sept2013_Part2 (pdf)
De novo assembly
See this github repo: https://github.com/lexnederbragt/INF-BIO9120_fall2013_de_novo_assembly
